Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00689 ATGGCATCATCAAGCTCTTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGGTGCATCTTTGCGCCTTACTTTCCACCTGAGGAACCCCAAAAGTTCGCCAACGTTCACAAGATATTTGGTGCCAGCAATGTGACTAAGCTCCTCAACGAACTCCTCCCTCATCAGAGGGAAGATGCTGTGAATTCCCTTGCCTATGAAGCTGAGGCTCGTGTGAGAGACCCGGTTTATGGCTGTGTAGGTGCCATCTCTTTCCTCCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCTAATGCTGATCTGCTTCGTTATGCCTACAATGACATCCACCCAGCAACTATGCAACCAGGAATCACCACTTCAATTCAACAAATGCCCCAAAGGTCTTTTGGTGGAAGAATTGGTAATGAAGCAAGTGGGTTTTATCGCCAATCTCCCACCCCTTACTCTTCTTTTCCTTGCTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCCATGAGGGAGGAGGAGGAGGAGGTAATTTGTGA 558 0.4749 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDIHPATMQPGITTSIQQMPQRSFGGRIGNEASGFYRQSPTPYSSFPCSLPWTDTSSEDIHEGGGGGGNL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00689 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 130 - -
Rops10g00689 185 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Rops10g00689 185 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Rops10g00689 185 Coils Coil 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00689 Rops-Chr10 16856422 16856979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00689 1 136 AS2 family AT5G63090 81.752 4.65e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops10g00689 LOB 2.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00689 - - gmx:100803667 299.671