Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00683 ATGGGTATCAACATAAAGGGACAAATAGAGAAGGTGAATGGGAAGGAACTGAGTTACAGTGAGTTTGTGGAAAGATATATGGAGAAGAACCAGCCTGTGGTGCTCACTGGATTAATGGAACATCATCATTGGAGGGCTTGCACTGATTGGGTCACCCCTTGTGGAAAACCCAATTTTCAATTTTTCTCCACTCATTTTGGGTCCTCTAAAGTTCAGGTTGCAGATTGTGATACCAGAGATTTCACTGATCAAAAAAGAGAGGAGATGTTGGTTTCAGATTTCACTGGACGTTGCCTCCAAGTTGAGGGTTCTGCAGTTCAGTGTAACAATGAAAATGGTACAACTAATGGTCACTCTGTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAGTACCCAAAATATATAGCATATATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTTGACAACTTCAGAATGCATACAGATTCTGACACTTACCAACAAAATAATGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGGTGAAAGGAACTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGTGGAAACAAGCAATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTATATTTGACAGGAATATGAAAAGCTGTGTATATAATATATTTGATGAAGTATCTGACTCAAAATATCCTGGTTTTAGAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTATAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGACGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGCATTTTTATGACTTCTTTACTTTCTTGTCATACTTATCCTTGGCCAACTTGGTGCTGCTTTGCTATATAAATGGAAGAGATGGAAGTACCACTAGAATTTCATCAACAGTAGCTCAGCATTTATCTATGAATCTTGAGTCTATAAGGAAGATTGCATCAGAGATGAAACACATGCACGCTTTGGAAGGAAATCATGATTGGGCTGTGGATATGATCAAAACATTTGAAGATCCTAGGTTTTCCAAATTGTGCATGCAAGTGGGAAGAACATATTTAACGATACATGAACAATCTGATTTGTCCTCCGATTTTGAGAGCTCTTCAATGGTTGATTTGGTGGATCTCAATGTTTTAAAAGCATCCACTTCTTCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGCTGTTGCAGAACTGGGTGAATGTTACATTGAGTCATCTGTACTACACAACGCTTGA 1473 0.3842 MGINIKGQIEKVNGKELSYSEFVERYMEKNQPVVLTGLMEHHHWRACTDWVTPCGKPNFQFFSTHFGSSKVQVADCDTRDFTDQKREEMLVSDFTGRCLQVEGSAVQCNNENGTTNGHSVSVPYLKDWHFVKEYPKYIAYITPMFFCDDWLNLYLDNFRMHTDSDTYQQNNEICCSDYRFVYMGVKGTWTPLHADVFRSYSWSANVCGNKQWLFLDPSQCHLIFDRNMKSCVYNIFDEVSDSKYPGFRKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMHFYDFFTFLSYLSLANLVLLCYINGRDGSTTRISSTVAQHLSMNLESIRKIASEMKHMHALEGNHDWAVDMIKTFEDPRFSKLCMQVGRTYLTIHEQSDLSSDFESSSMVDLVDLNVLKASTSSQIYTPEDLIKFIDNAVAELGECYIESSVLHNA* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00683 490 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 335 - -
Rops10g00683 490 ProSiteProfiles JmjC domain profile. 131 303 IPR003347 -
Rops10g00683 490 SUPERFAMILY Clavaminate synthase-like 7 315 - -
Rops10g00683 490 SMART cupin_9 145 303 IPR003347 -
Rops10g00683 490 Pfam Cupin-like domain 21 286 IPR041667 -
Rops10g00683 490 Gene3D Cupin 3 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00683 Rops-Chr10 16701569 16705666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00683 124 295 Glycosyltransferase AT1G78280 25.824 1.10e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops10g00683 Cupin_8 2.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00683 - - gsj:114409851 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00683 10 16701569 16705666 Rops10g00683 10 16701569 16705666 ECH