Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00672 ATGGAGAACCTGTATGGCTTCGACTATTCGGAGCAGTTATCAATGGTTCCGCCGCCACCATCAGCTCCGAACAGTTCCAACGTGATTAGGACACTAGCCGAACCGAAGCAGTTAGTCCAGTCCGGTTCTTCTTCATCAGATGCAATGTCATCTAAGGTTGTGTTGGAGTTGGAGGAGGATGAGGATGTTTCTAAAGCACTTCGAGCTAAAATTGCTTCTCATCCTCTTTTTCCTCACCTTCTCCATGCCTATATCGATTGCCAAAAAGTGGGAGCCCCGCAAGAGATGGCGCAGCTATTAGATGGAATCAGAGAAGAGCAGCAAAGTGGTTTGTGTCAGATATCTTCTACCTTCTGTGGTGTTGATCCCGAGCTCGACGATTTCATGGAAACGTATTGCAATTTATTGATGAAGTTCAAATCCGATCTTTCAAGGCCAGTTGATGAGGCAACCACGTTCCTCAACGACATGGAAACCCAGCTTAACTCCATCTGCAACAACAATATTTCTCCTCAACCTGGATCTGAGGATTGTGTTGATTTGGTGGAAAATGAAGTTACTGGATCATCCGAAAAACATTTTAGCATGGAGGAGAAAGAAGCAGCTGAATGCAAGACGACAAATGAAGTTCAAGAGCTGAAGGACAATCTTCTACGTAGATATTGCGGCTACATCAGTACTCTTAAGCATAAATTTTCCGAAACGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAACAAATATTACTTTCATGGTGGAATATTCACTTCAAATGGCCATACCCAACGGATGCGGATAAGGTTGCCCTAGCTGAATGCACTGGTCTGGACGAAAAGCAAGTTAAGGAACATAAAGTGAAACAACTTAAAGAAATGGCCCCTCCTTCATGCTCAGAAAACATGCTTCTGGCTGAAAGGAGTTTCATAACTGGGTCGGAAACATGGTTTTGTGCTAATGGCTATCGTTTGGAATGGACACCATCTCAAGACTTTGATGCCAAGGTTGGTTCTTGTATGCTTAAACTTATACTTGCAACGGAAAGCTTATCCGAAAAACCAACGGAAAGCTTATGA 1074 0.4311 MENLYGFDYSEQLSMVPPPPSAPNSSNVIRTLAEPKQLVQSGSSSSDAMSSKVVLELEEDEDVSKALRAKIASHPLFPHLLHAYIDCQKVGAPQEMAQLLDGIREEQQSGLCQISSTFCGVDPELDDFMETYCNLLMKFKSDLSRPVDEATTFLNDMETQLNSICNNNISPQPGSEDCVDLVENEVTGSSEKHFSMEEKEAAECKTTNEVQELKDNLLRRYCGYISTLKHKFSETKKKEKLPKEAKQILLSWWNIHFKWPYPTDADKVALAECTGLDEKQVKEHKVKQLKEMAPPSCSENMLLAERSFITGSETWFCANGYRLEWTPSQDFDAKVGSCMLKLILATESLSEKPTESL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00672 357 Pfam Homeobox KN domain 252 282 IPR008422 GO:0003677|GO:0006355
Rops10g00672 357 SMART ELK_2 212 233 IPR005539 GO:0003677
Rops10g00672 357 Pfam ELK domain 212 233 IPR005539 GO:0003677
Rops10g00672 357 SMART KNOX1_2 65 109 IPR005540 GO:0003677|GO:0005634
Rops10g00672 357 ProSiteProfiles ELK domain profile. 212 232 IPR005539 GO:0003677
Rops10g00672 357 SUPERFAMILY Homeodomain-like 235 282 IPR009057 -
Rops10g00672 357 CDD homeodomain 236 282 IPR001356 GO:0003677
Rops10g00672 357 SMART KNOX2_2 115 166 IPR005541 GO:0003677|GO:0005634
Rops10g00672 357 Pfam KNOX1 domain 67 107 IPR005540 GO:0003677|GO:0005634
Rops10g00672 357 Gene3D - 219 285 - -
Rops10g00672 357 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 284 - -
Rops10g00672 357 Pfam KNOX2 domain 120 165 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00672 Rops-Chr10 16540060 16549655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00672 1 312 Homeobox Transcription Factor Family AT1G23380 41.141 7.51e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00672 - - aprc:113874840 301.597