Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00671 ATGGTTCCGCCGCCACCATCAGCTCCGAACAGTCACGACGTGATTAGGACACTAGCCGAACCGAAGCAGTTAGTCCAGTCCGGTTCTTCTTCATCAGATGCAATGTCATCTAAGGTTGTGTTGGAGTTGGAGGAGGATGAGGATGTTTTCAAAGCACTTCGAGCTAAAATTGCTTCTCATCCTCTTTTTCCTCACCTTCTCCATGCCTATATCGATTGCCAAAAGGTGGGAGCGCCGCAAGAGATGGCGCAGCTATTAGATGGAATCAGAGAAGAGCAGCAAAGTGGTTTGTGTCAGATATCTTCTACCTTCTGTGGTGTTGATCCCGAGCTCGACGATTTCATGGATACGTATTGCAATTTATTGATGAAGTTCAAATCCGATCTTTCAAGGCCAGTTGATGAGGCAACCACGTTCCTCAACAACATGGAAACCCAGCTTAACTCCATCTCCAACAACAATATTTCTCCTCAACCTGGATCTGAGGATTGTGTTGATTTGGTGGAAAATGAAGTTACTGGATCATCCGAAAAAGATTTTAGCATGGAGGAGAAAGAAGCAGCTGAATGCAAGAGGACAAATGAAGTTCAAGAGCTGAAGGACAATCTTCTACGTAGATATAGCGGCTATATTAGTACTCTGAAGCATGAATTTTCCAAATCGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAACAAATATTACTTTCATGGTGGAATATTCACTTCAAATGGCCATACCCAACGCATGCGGATAAGGTTGCCCTAGCTGAATGCACTGGTCTGGACGAAAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAGACGCCATTGGAAACCAACAAATGAAATGCAAGCTGCAGTTTTGGATGGCCTCTATGGACCTCTGCACGAGTCAGAGTGA 906 0.436 MVPPPPSAPNSHDVIRTLAEPKQLVQSGSSSSDAMSSKVVLELEEDEDVFKALRAKIASHPLFPHLLHAYIDCQKVGAPQEMAQLLDGIREEQQSGLCQISSTFCGVDPELDDFMDTYCNLLMKFKSDLSRPVDEATTFLNNMETQLNSISNNNISPQPGSEDCVDLVENEVTGSSEKDFSMEEKEAAECKRTNEVQELKDNLLRRYSGYISTLKHEFSKSKKKEKLPKEAKQILLSWWNIHFKWPYPTHADKVALAECTGLDEKQVNNWFINQRRRHWKPTNEMQAAVLDGLYGPLHESE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00671 301 Gene3D - 216 289 - -
Rops10g00671 301 CDD homeodomain 233 281 IPR001356 GO:0003677
Rops10g00671 301 SMART KNOX1_2 51 95 IPR005540 GO:0003677|GO:0005634
Rops10g00671 301 SMART HOX_1 220 285 IPR001356 GO:0003677
Rops10g00671 301 SUPERFAMILY Homeodomain-like 220 291 IPR009057 -
Rops10g00671 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 33 286 - -
Rops10g00671 301 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Rops10g00671 301 ProSitePatterns 'Homeobox' domain signature. 256 279 IPR017970 GO:0000981|GO:0006355
Rops10g00671 301 Pfam Homeobox KN domain 238 277 IPR008422 GO:0003677|GO:0006355
Rops10g00671 301 Pfam ELK domain 198 219 IPR005539 GO:0003677
Rops10g00671 301 SMART ELK_2 198 219 IPR005539 GO:0003677
Rops10g00671 301 ProSiteProfiles 'Homeobox' domain profile. 218 281 IPR001356 GO:0003677
Rops10g00671 301 Pfam KNOX2 domain 106 150 IPR005541 GO:0003677|GO:0005634
Rops10g00671 301 Pfam KNOX1 domain 53 93 IPR005540 GO:0003677|GO:0005634
Rops10g00671 301 ProSiteProfiles ELK domain profile. 198 218 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00671 Rops-Chr10 16508968 16514558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00671 25 301 Homeobox Transcription Factor Family AT1G23380 49.466 5.04e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops10g00671 KNOX2 4.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00671 - - ccaj:109811765 341.273