Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00670 ATGGTTCCGCCGCCACCATCAGCTCCGAACAGTCACGCCGTGATTAGGACACTAGCCGAACCGGAGCAGTTAGTCCGGTCCGGTTCTTCTTCATCAGATGCAATGTCATCCAAGGTTGTGTTGGAGTTGGAGGAGGATGAGGATGTTTTCAAAGCACTTCGAGCTAAAATTGCTTCTCATCCTCTTTTTCCTCACCTTCTCCATGCCTATATCGATTGCCAAAAGGTGGGAGCGCCGCAAGAGATGGCGCAGCTATTAGATGGAATCAGAGAAGAGCAGCAAAGTGGTTTGTGTCAGATATCTTCTACCTTCTGTGGTGTTGATCCCGAGCTCGACGATTTCATGGAAACGTTTTGCAATTTATTGATGAAGTTCAAATCCGATCTTTCAAGGCCAGTTGATGAGGCAACCACGTTCCTCAGCGACATGGAAACCCAGCTTAACTCCATCTGCAACAACAATATTTCTCCTCAACCTGATGAACAAGTTACTGGATCATCCGAAAAAGATTTTAGCATGGAGGAGAAAGAAGCAGCTGAATGCAAGAGGACAAATGAAGTTCAAGAGCTGAAGGACAATCTTCTACGTAGATATAGCGGCTATATTAGTACTCTGAAGCATGAATTTTCCAAATCGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAACAAATATTACTTTCATGGTGGAATATTCACTTCAAATGGCCATACCCAACGGATGCAGATAAGGTTGCCCTAGCTGAATGGACTGGTCTGGACCAAAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAACCAACAAATGAAATGCAAGCTGCAGTTTTGGATGGTCTCTATGGACCTCTGCAAGAGTCAGAGTGA 879 0.4391 MVPPPPSAPNSHAVIRTLAEPEQLVRSGSSSSDAMSSKVVLELEEDEDVFKALRAKIASHPLFPHLLHAYIDCQKVGAPQEMAQLLDGIREEQQSGLCQISSTFCGVDPELDDFMETFCNLLMKFKSDLSRPVDEATTFLSDMETQLNSICNNNISPQPDEQVTGSSEKDFSMEEKEAAECKRTNEVQELKDNLLRRYSGYISTLKHEFSKSKKKEKLPKEAKQILLSWWNIHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTNEMQAAVLDGLYGPLQESE* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00670 292 CDD homeodomain 224 272 IPR001356 GO:0003677
Rops10g00670 292 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677
Rops10g00670 292 SMART ELK_2 189 210 IPR005539 GO:0003677
Rops10g00670 292 Gene3D - 207 280 - -
Rops10g00670 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 277 - -
Rops10g00670 292 SMART KNOX1_2 51 95 IPR005540 GO:0003677|GO:0005634
Rops10g00670 292 Pfam KNOX1 domain 53 93 IPR005540 GO:0003677|GO:0005634
Rops10g00670 292 SMART HOX_1 211 276 IPR001356 GO:0003677
Rops10g00670 292 Pfam KNOX2 domain 106 151 IPR005541 GO:0003677|GO:0005634
Rops10g00670 292 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677
Rops10g00670 292 SUPERFAMILY Homeodomain-like 211 282 IPR009057 -
Rops10g00670 292 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677|GO:0006355
Rops10g00670 292 ProSitePatterns 'Homeobox' domain signature. 247 270 IPR017970 GO:0000981|GO:0006355
Rops10g00670 292 Pfam ELK domain 189 210 IPR005539 GO:0003677
Rops10g00670 292 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00670 Rops-Chr10 16474602 16480758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00670 31 286 Homeobox Transcription Factor Family AT1G23380 52.490 3.05e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops10g00670 KNOX2 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00670 - - gmx:102662019 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00670 10 16474602 16480758 Rops10g00670 10 16474602 16480758 ECH