Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00660 ATGGATCTTGAGACAAAGCTTAGAGAAACCTATGTCTCAAAGCCAATGCATTTACAAGAAAACTACTTGAAACCAAACATGAAAGATGAGCTTCTTTTTGGGGTTCCTTCATCTCAGGGAATCATGCAAGATTTTCAATATATTGATCAGTTTCATGAGAATGGTTCCTCATCCAATCCTGTTTCTGGGGTCCAAACTCCAAATTTTGATCCTTGTGATAATTTTAACTTTGTAGGTTCATCAGCTGGTTTTGATGTTTATGAGTTGAAGCCTTTTGTGGAGAATAGTGGTAGTGGGCATGCTCATGTCATGGATAATTTCCTATATGGAGGTTATGGCATAAACCTCCCTCAGAGGAATCAACTTGACATGATGGTTTCAAACCAAAGCTATTTGCCCTTTGATCATCAAGAAACCAAGCCTATGAATTTTGTTGTACCTGATGAAGTCTCAAGCATATCTCCAATGAATCATTACAAGAGAGTTGGTATTAACAAAAACCATAGGGAATATCCAACAACTAGAAGGACACACAAAGTTCGTAAGAAGTCCAACATAGTAAAGGGCCAATGGACAGTAGAAGAAGATGGGTTGTTGATTCAACTGGTTGAGCAATATGGATTGAGAAAGTGGTCTCATATTGCTCAGATATTGCCTGGAAGAATAGGAAAACAGTGCAGAGAGCGATGGCATAATCATCTAAGGCCTGACATTAAGAAGGACACATGGACTGATGAAGAGGATAAGATATTGATCCAAGCTCATGCAGAGATAGGAAACAAATGGGCTGAGATTGCTAAAAGATTGCCAGGAAGAACTGAGAACTCAATCAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGTTCAAAGCACCCTAGAGGCACTCTTTTGCAAGAATATATCAAGAGCTTGAACTTAGACAAAAACCCTCCAATAGACTATAGGAGAAAGTCTTCTACTAATGTTAGTGCCATGAAAAACAAAACCGTCACAAGCAGAGTCACAGCTCAGCCCCAGATAGCAGATCATCTTTGTCTCAGTGATTGCTTGGTACCAAATTGTGATTTTAATGAGGTCCCAGCTTTTTGCTTTGATGAGAATTTGTTTGAAGAAGGGTGCAGTATTGATTCTTTGCTTGATGATATGCCTTGTGCTCCTAGTTTGGATGAGAAGAAAGATTTTGGAGGAAAAATGCAATGTGCTACTACTATGGAAGCAAAACATTCTGTTGTTAATCTTGATGATAATAATGTTGAGACAGAGATGCCATTGGAGATTATGGCATCCATGCTTGGGGTTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGGTGTCTCATGTCAATAAAATTGTTAAGTGA 1383 0.3876 MDLETKLRETYVSKPMHLQENYLKPNMKDELLFGVPSSQGIMQDFQYIDQFHENGSSSNPVSGVQTPNFDPCDNFNFVGSSAGFDVYELKPFVENSGSGHAHVMDNFLYGGYGINLPQRNQLDMMVSNQSYLPFDHQETKPMNFVVPDEVSSISPMNHYKRVGINKNHREYPTTRRTHKVRKKSNIVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQILPGRIGKQCRERWHNHLRPDIKKDTWTDEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKHPRGTLLQEYIKSLNLDKNPPIDYRRKSSTNVSAMKNKTVTSRVTAQPQIADHLCLSDCLVPNCDFNEVPAFCFDENLFEEGCSIDSLLDDMPCAPSLDEKKDFGGKMQCATTMEAKHSVVNLDDNNVETEMPLEIMASMLGVEVKKEMDLVEMVSHVNKIVK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00660 460 CDD SANT 242 285 IPR001005 -
Rops10g00660 460 ProSiteProfiles Myb-like domain profile. 183 234 IPR001005 -
Rops10g00660 460 ProSiteProfiles Myb-like domain profile. 235 285 IPR001005 -
Rops10g00660 460 CDD SANT 191 234 IPR001005 -
Rops10g00660 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 289 IPR017930 -
Rops10g00660 460 PANTHER MYB PROTEIN-RELATED 167 325 - -
Rops10g00660 460 SMART sant 187 236 IPR001005 -
Rops10g00660 460 SMART sant 239 287 IPR001005 -
Rops10g00660 460 Gene3D - 187 239 - -
Rops10g00660 460 FunFam Transcriptional activator Myb isoform A 187 240 - -
Rops10g00660 460 SUPERFAMILY Homeodomain-like 185 281 IPR009057 -
Rops10g00660 460 Gene3D - 241 293 - -
Rops10g00660 460 Pfam Myb-like DNA-binding domain 191 245 - -
Rops10g00660 460 FunFam Transcription factor MYB119 241 305 - -
Rops10g00660 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 238 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00660 Rops-Chr10 16323010 16324786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00660 85 396 MYB Transcription Factor Family AT4G18770 52.353 1.75e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g00660 Myb_DNA-bind_6 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00660 K09422 - gmx:102662267 665.611