Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00648 ATGAAGAATTTTTACTGGTATAAACCAATTTCTAACAACGGCAAACTAGAGAGAAGGCTTTCGCTTGGAGAGTACAAGCGAGCAGTGTCATGGTCAAAGTATCTTGTATCTCATGGGGCTGCTATAAAGGGAGAAGATGAAGAGGATTGGAGTGCTGATTTGTCTCAGTTGTTTATTGGATCCAAATTTGCTTCTGGGAGACACAGCAGAATCTACAGAGGTGTTTACAAGCAAAGGGATGTGGCAATTAAACTGGTGAGTCAACCTGAAGAGGATGAAGACTTGGCTTCTTTTCTTGAGAAGCAATTCACTTCTGAGGTTGCTTTGTTGTTTCGTTTACGCCATCCAAATATCATTACTTTCATTGCTGCTTGCAAGAAACCTCCTGTCTTCTGTATAATCACTGAATATTTGGCTGGGGGCTCACTGAGAAATTTCCTACATCAACAAGGACCACATTCAGTTCCTCTTGAACTTACTCTGAAATTAGCCCTTGACATTGCAAGGGGAATGCAATATCTTCATTCTCAGGGAATACTTCATAGGGATCTAAAATCAGAGAATCTCTTGTTAGGGGAAGATATGTGTGTAAAAGTAGCTGATTTTGGGATCTCATGCTTAGAATCTCAGTGTGGTAGTGCAAAAGGATTTACTGGAACCTACCGTTGGATGGCTCCTGAAATGATCAGAGATAAGCATCATACCAAGAAAGTAGATGTGTATAGTTATGGCATAGTTCTATGGGAGCTAATAACAGGACAGACACCATTTAACAATATGACCCCAGAGCAGGCAGCATTTGCAGTTTGCTACAAGAATGCAAGACCTCCAATGCCAACTGATTGTCCTTGGGCATTTAAGAATCTCATTCATAGATGCTGGTCAAGCAATCCAGAAAAAAGGCCACATTTTGATGAGATAGTTTCCATTTTGGAGAACTATACAGAATCACTTGAGAAGGATCCGTTATTTTTCTCTACTTACAACAAACCGAGTCCTACTACTAATACCATTCTGGGTTGCTTCCCCAAATGGATTTCTCGCCATAAATCTGCTACTTGCAAAGCATAA 1071 0.4043 MKNFYWYKPISNNGKLERRLSLGEYKRAVSWSKYLVSHGAAIKGEDEEDWSADLSQLFIGSKFASGRHSRIYRGVYKQRDVAIKLVSQPEEDEDLASFLEKQFTSEVALLFRLRHPNIITFIAACKKPPVFCIITEYLAGGSLRNFLHQQGPHSVPLELTLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIRDKHHTKKVDVYSYGIVLWELITGQTPFNNMTPEQAAFAVCYKNARPPMPTDCPWAFKNLIHRCWSSNPEKRPHFDEIVSILENYTESLEKDPLFFSTYNKPSPTTNTILGCFPKWISRHKSATCKA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00648 356 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 53 314 - -
Rops10g00648 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Rops10g00648 356 SUPERFAMILY Protein kinase-like (PK-like) 45 311 IPR011009 -
Rops10g00648 356 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
Rops10g00648 356 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Rops10g00648 356 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Rops10g00648 356 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Rops10g00648 356 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Rops10g00648 356 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Rops10g00648 356 CDD STKc_MAP3K-like 64 311 - -
Rops10g00648 356 ProSiteProfiles Protein kinase domain profile. 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00648 356 Gene3D Transferase(Phosphotransferase) domain 1 140 332 - -
Rops10g00648 356 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00648 356 Pfam Protein tyrosine and serine/threonine kinase 60 311 IPR001245 GO:0004672|GO:0006468
Rops10g00648 356 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00648 Rops-Chr10 15867512 15872104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00648 30 341 MAP Kinase Kinase Kinase AT1G62400 60.938 1.11e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops10g00648 PK_Tyr_Ser-Thr 2.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00648 - - gmx:100807757 612.838