Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00645 ATGGCCGTAAGAGGCGTCAATTTCAAGTGGTACGATGGATTTTTCTTGTCCATGCTCGCCACCAGCATAGCTATTGTGGCAATTAATTGGAAGCGGTACCATTCTTGTGCATACCCCTTGCACATTTGGATTGTGGTTGACTACACTACTGTTTTTACTTTTCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGGTTCTGTGGAAGGGTAGTTGTGCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCCTGTGGTTCAGCAATGCTAAAATATGCTTGCCCGGACCGGGTCAGAAATGGGGCTTCCTGATCTGGTTACTTTTTAGCTACGGTGGACTCCTTTGTATTGCTTGCATGTCAACGGGAAAGTGGTTGACACGAAGACAAGCACATTTGTCAGGTGCCCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACTAGGAGCATGGGCCAAGATGCTGCTTTATATCATCCTGGAATTTACCTAACTCCTGCTCAGAGAGAAGCAATTGAAGCTTTAATTCAGGAACTCCCAAAGTTTAGTTTAAAGGCTGTTCCTACCGATTGCAGTGAATGTCTCATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGGATGCATTGATGAGTGGCTTCGGCTGAATGTGAAATGTCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTTTGTCCAATATCCATTCTGAGCCTGAACAGTCTTCTGTTAGTGTAGTGACAACAACCAGATAG 924 0.4513 MAVRGVNFKWYDGFFLSMLATSIAIVAINWKRYHSCAYPLHIWIVVDYTTVFTFRLLMFVDNGLASGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFSNAKICLPGPGQKWGFLIWLLFSYGGLLCIACMSTGKWLTRRQAHLSGAQQGIPVSEYGVLVEMIRVPDWAFEAAGQETRSMGQDAALYHPGIYLTPAQREAIEALIQELPKFSLKAVPTDCSECLICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNIHSEPEQSSVSVVTTTR* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00645 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Rops10g00645 307 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Rops10g00645 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 307 IPR044793 GO:0004842|GO:0010182
Rops10g00645 307 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Rops10g00645 307 SUPERFAMILY RING/U-box 216 284 - -
Rops10g00645 307 SMART ring_2 235 275 IPR001841 -
Rops10g00645 307 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00645 Rops-Chr10 15817431 15822362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00645 58 306 C3H Transcription Factor Family AT3G47990 77.912 4.36e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00645 K16284 - gmx:100812016 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00645 10 15817431 15822362 Rops10g00645 10 15817431 15822362 ECH
Rops2g03998 2 73130501 73136113 Rops10g00645 10 15817431 15822362 PCT