Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g00645 | ATGGCCGTAAGAGGCGTCAATTTCAAGTGGTACGATGGATTTTTCTTGTCCATGCTCGCCACCAGCATAGCTATTGTGGCAATTAATTGGAAGCGGTACCATTCTTGTGCATACCCCTTGCACATTTGGATTGTGGTTGACTACACTACTGTTTTTACTTTTCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGGTTCTGTGGAAGGGTAGTTGTGCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCCTGTGGTTCAGCAATGCTAAAATATGCTTGCCCGGACCGGGTCAGAAATGGGGCTTCCTGATCTGGTTACTTTTTAGCTACGGTGGACTCCTTTGTATTGCTTGCATGTCAACGGGAAAGTGGTTGACACGAAGACAAGCACATTTGTCAGGTGCCCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACTAGGAGCATGGGCCAAGATGCTGCTTTATATCATCCTGGAATTTACCTAACTCCTGCTCAGAGAGAAGCAATTGAAGCTTTAATTCAGGAACTCCCAAAGTTTAGTTTAAAGGCTGTTCCTACCGATTGCAGTGAATGTCTCATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGGATGCATTGATGAGTGGCTTCGGCTGAATGTGAAATGTCCTCGGTGCCGCTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTTTGTCCAATATCCATTCTGAGCCTGAACAGTCTTCTGTTAGTGTAGTGACAACAACCAGATAG | 924 | 0.4513 | MAVRGVNFKWYDGFFLSMLATSIAIVAINWKRYHSCAYPLHIWIVVDYTTVFTFRLLMFVDNGLASGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFSNAKICLPGPGQKWGFLIWLLFSYGGLLCIACMSTGKWLTRRQAHLSGAQQGIPVSEYGVLVEMIRVPDWAFEAAGQETRSMGQDAALYHPGIYLTPAQREAIEALIQELPKFSLKAVPTDCSECLICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNIHSEPEQSSVSVVTTTR* | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g00645 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
Rops10g00645 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
Rops10g00645 | 307 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 307 | IPR044793 | GO:0004842|GO:0010182 | |
Rops10g00645 | 307 | FunFam | E3 ubiquitin-protein ligase SIS3 | 203 | 281 | - | - | |
Rops10g00645 | 307 | SUPERFAMILY | RING/U-box | 216 | 284 | - | - | |
Rops10g00645 | 307 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
Rops10g00645 | 307 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g00645 | Rops-Chr10 | 15817431 | 15822362 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g00645 | 58 | 306 | C3H Transcription Factor Family | AT3G47990 | 77.912 | 4.36e-140 | 396 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g00645 | K16284 | - | gmx:100812016 | 570.852 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops10g00645 | 10 | 15817431 | 15822362 | Rops10g00645 | 10 | 15817431 | 15822362 | ECH | |
Rops2g03998 | 2 | 73130501 | 73136113 | Rops10g00645 | 10 | 15817431 | 15822362 | PCT |