Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00643 ATGACAAAAACAAGCACCAACAGCAATGATTCTTCTAAACTTGATCGCAAAACCATTGAAAGGAACCGCAGAATTCACATGAAAAAACTGTGTCACCAGCTTGCTTCTCTCATCCCTTCCAACCTTAATCCACCCAAATCCAAGCATATGGTAGCACAGCAGGACCAGCTGGATCTGGCAGCGAGGTATATAAAGCATATGAGGAAAAGAATAGACAAATTGAAGAGTCAGAAGGAGCAAGCCATGAGTTCAAACCAAACCAATAGAAAAATGTTCAATATTGATTCCCAATTGCCAATTCTTGAACTAAGAGACTTGGGTTCCGGCATAGAAGTGATGATGGTAGTTGGGTTGAACAACAAGACTTTCATGTTGTACGAAGTAATTAGTGTGCTTGAAGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTCTCAACCGTGGGTGATAAGATTTTTTACACTGTTCATGCTCAGGTTAAAATATCAAGACTGGGAGTAGAAACCACTAGGGTATATCAGAGGCTTCAGGATTTTATTGCCCCACTATAA 549 0.4062 MTKTSTNSNDSSKLDRKTIERNRRIHMKKLCHQLASLIPSNLNPPKSKHMVAQQDQLDLAARYIKHMRKRIDKLKSQKEQAMSSNQTNRKMFNIDSQLPILELRDLGSGIEVMMVVGLNNKTFMLYEVISVLEEEGAEVVTASFSTVGDKIFYTVHAQVKISRLGVETTRVYQRLQDFIAPL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00643 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 67 IPR011598 GO:0046983
Rops10g00643 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 93 IPR036638 GO:0046983
Rops10g00643 182 SMART finulus 17 73 IPR011598 GO:0046983
Rops10g00643 182 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 176 - -
Rops10g00643 182 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Rops10g00643 182 Gene3D - 13 93 IPR036638 GO:0046983
Rops10g00643 182 Coils Coil 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00643 Rops-Chr10 15752575 15753913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00643 1 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 31.250 3.49e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00643 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00643 - - gmx:100790403 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03995 2 73046463 73048135 Rops10g00643 10 15752575 15753913 ECH
Rops10g00643 10 15752575 15753913 Rops10g00643 10 15752575 15753913 ECH
Rops2g03995 2 73046463 73048135 Rops10g00643 10 15752575 15753913 PCT