Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00641 ATGTTGTTTGTGGGGATTGCTGTTTTGGTGTTCATCCATGTTTGCATAGTGGGAAGGGCTTTCAGAAGGGATAGTAGTAATAATAATAATGGTCATGGTGGAGGTGGAGGTGGTCAAGGTCAGAGTAGCAGCACCATGAAAAGAAGTTGTGGTGATGATAATGGTGACTTGAAGAACCTACCTTGCTTTGATTATGAGGAACCAGAGAAAGGTTGCAGCCTCATGGATTGTGCTGTGTGCTTGGAGAACTTCAAGGTTGGTGATGTGTGTAGATTGATGCCCAATTGTGGCCATAGCTTCCATGTTCAGTGTATAGATTCATGGATACTCAAGACACCCTTTTGTCCCATTTGTAGAACATGGGTTCATTCCAGAGTAATGATAGAGAAAGAAGGTGAAAGTGCTGTTTCTAACAATTTAGAAGTTGACATGGCATAA 438 0.4201 MLFVGIAVLVFIHVCIVGRAFRRDSSNNNNGHGGGGGGQGQSSSTMKRSCGDDNGDLKNLPCFDYEEPEKGCSLMDCAVCLENFKVGDVCRLMPNCGHSFHVQCIDSWILKTPFCPICRTWVHSRVMIEKEGESAVSNNLEVDMA* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00641 145 Pfam Ring finger domain 76 119 IPR001841 -
Rops10g00641 145 SMART ring_2 77 118 IPR001841 -
Rops10g00641 145 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Rops10g00641 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 126 - -
Rops10g00641 145 SUPERFAMILY RING/U-box 61 125 - -
Rops10g00641 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 127 IPR013083 -
Rops10g00641 145 MobiDBLite consensus disorder prediction 27 50 - -
Rops10g00641 145 FunFam RING-H2 finger protein ATL2K 52 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00641 Rops-Chr10 15719287 15720160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00641 57 133 C3H Transcription Factor Family AT2G18670 43.590 3.66e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00641 - - gmx:102662620 183.726