Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00639 ATGACATCTAAACTCAACTTAACAACGACGACGACGACAACAACAACAACAGATCATCGCCGTCCCCTATCTTTCCCAGCCGTTCATCCCTGTGAATCCATATCTCCATCCACCCTCCTTTCCTCTCTCATCACCCTCTCCCAAAACATCTCCACTCTCCAATCACAACACTCTTTCACCACTCAAAAACGAAACGCCAGAGAAACAACACGCCAGGTCGCAATCCTCCTCATTTTCTTCCAAGAAATTCGTGACAACGGTTCATTCATCCCAGACACTATCATTCCCTGTTTCTCAAAGCTTCACCTTGTTTTCCAGAAAATCCATTTCTTGTTACAAGACTGTGTCCGCGAAGGTTCACGATTATGGATGCTCATGAAATCTCAACACGTGGCAAATCAGTTTCGGATTCTCATCCGTTCCGTGGCCAATACTTTAGAAGCGTTGCCATTAAACGGCATCGTCGTTTGCGGCGAGGTGAAGGAGTTAGTTGAGTTAGTTACAAAACAAGCAAGGAAAGCCAAGTTAGAACTCGATCAAAACGACGAACTTGAAGCCAAACGAGTTTCTTCCGTTTTGAATCAGTTCGAGAGAGGAACCGAGCCTGACGTGGAAGCCATGAAGCGAGTTCTTGATTATCTCGAAATCAAGAGTTGGAATGATTGTAACAAGGAGATCAAATTCCTCGAAAACGAAATGGATTCTTCTAACGAACAAGAGGTTCCGTTTTTTAGTGGTTTAATAGGATTCTTGTGTTACTCTAGAGTGGTCATATTTGAAGATATTCAAAGTTTCCAACTTGTTAGCAGAAACTCAGCTGAACAATCAGAACAGTTAAGCTTGGTTACGCCAGAGGAATTTCGTTGCCCGATTTCGCTAGAACTCATGACGGATCCAGTTACAGTTTCAACCGGACAGACTTACAATCGAGCCTCGATTCTAAAATGGTTGAAGACAGGAAACATGACATGTCCAAAAACAGGGGAGAAGCTAAAAAACACAGAACTGTTCCCAAACGCAACACTAAAGAAGCTTATCCAACAATTCTGTTCTGAAAACGGTATTTCCATAGCCAAATCACGCAGCATAGTGAGAACCATTGAACCAGGTTGTTCAGCAGCAGCACAAGCCATGCAGTTTCTCTCGTGGTTTCTCGCTCGTAGGTTGGTGTTTGGAACAGAGGAACAGAAAAACAAAGCTGCTTATGAAATTCGTTTGCTTGCAAGGTCAAACATTTTCAACAGGGAGTGTTTGGTTGAAATGGGAACTGTTCCCCCCTTGCTAGATCTTTTAGCCACGAATGATGCAACAACACAAGAGAACGCAATATCTGCTTTGTTGAAACTTTCAAAGCATGCAACTGGTCAACAAGTGATAATGGATTATAGAGGTTTAGCTTCAATCATTGAGGTTCTCAAAAGAGGGAAGAGTCTAGAAGCTCGCCAAGTTGCAGCTGCTATAATATTTTATCTTTCTTCGGTTAAAGAGTATAGAAAATTAATAGGTGAAAACAAAGAAGCAATTCCAGCTTTAGTAAAGATTATAAAAGACGGAACAACTAGTGCGAAGAAAAACGCAGTGGTTGCGATTTTCGGGTTGCTCTTACTTCCCAAGAATCATAAAAAGGTGCTTGCAGCTGGTGCTGTTCCTGAACTTGTTGGGGTCTTAGCTTCTTCTGACAAAGCTGAACTTGTTACTGATTGTTTAGCAGTTCTTGTAGCATTGGGAGAAAGCACTGAGGGAGCTTTAGCTATATTTCAAGCTTCGGCTTTGAAATTGGTCATTGGGGCTTTGCAATCAGCAACTTCACGTGCGGGGAAGGAATATTGTGTTTCAATTTTGCTATCACTGTGTGTTAATATTGGTGCTGAGGTGGTAGAAGTTTTGGTGAAGGATCCTTCACTCATGCCTTTGCTTTATTCTCTTCTTACTGATGGTACTCCACATGCTGCAAAGAAAGCACGATCACTGATCAATGTTTTACAAGAATTCAATGAGAAAAGAAGTTCTGGATTGGTGGGTTCGTCTGTTTCGCAACAAAGATTGGTTCACTGA 2055 0.4204 MTSKLNLTTTTTTTTTTDHRRPLSFPAVHPCESISPSTLLSSLITLSQNISTLQSQHSFTTQKRNARETTRQVAILLIFFQEIRDNGSFIPDTIIPCFSKLHLVFQKIHFLLQDCVREGSRLWMLMKSQHVANQFRILIRSVANTLEALPLNGIVVCGEVKELVELVTKQARKAKLELDQNDELEAKRVSSVLNQFERGTEPDVEAMKRVLDYLEIKSWNDCNKEIKFLENEMDSSNEQEVPFFSGLIGFLCYSRVVIFEDIQSFQLVSRNSAEQSEQLSLVTPEEFRCPISLELMTDPVTVSTGQTYNRASILKWLKTGNMTCPKTGEKLKNTELFPNATLKKLIQQFCSENGISIAKSRSIVRTIEPGCSAAAQAMQFLSWFLARRLVFGTEEQKNKAAYEIRLLARSNIFNRECLVEMGTVPPLLDLLATNDATTQENAISALLKLSKHATGQQVIMDYRGLASIIEVLKRGKSLEARQVAAAIIFYLSSVKEYRKLIGENKEAIPALVKIIKDGTTSAKKNAVVAIFGLLLLPKNHKKVLAAGAVPELVGVLASSDKAELVTDCLAVLVALGESTEGALAIFQASALKLVIGALQSATSRAGKEYCVSILLSLCVNIGAEVVEVLVKDPSLMPLLYSLLTDGTPHAAKKARSLINVLQEFNEKRSSGLVGSSVSQQRLVH* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00639 684 FunFam RING-type E3 ubiquitin transferase 283 355 - -
Rops10g00639 684 Pfam Armadillo/beta-catenin-like repeat 414 450 IPR000225 GO:0005515
Rops10g00639 684 SMART arm_5 536 577 IPR000225 GO:0005515
Rops10g00639 684 SMART arm_5 410 451 IPR000225 GO:0005515
Rops10g00639 684 SMART arm_5 452 493 IPR000225 GO:0005515
Rops10g00639 684 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g00639 684 CDD RING-Ubox_PUB 284 336 IPR045210 -
Rops10g00639 684 PANTHER U BOX DOMAIN-CONTAINING 69 661 - -
Rops10g00639 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 590 IPR000225 GO:0005515
Rops10g00639 684 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Rops10g00639 684 Coils Coil 219 239 - -
Rops10g00639 684 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Rops10g00639 684 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g00639 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 365 IPR013083 -
Rops10g00639 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Rops10g00639 684 Gene3D - 391 503 IPR011989 -
Rops10g00639 684 Pfam U-box domain 284 353 IPR003613 GO:0004842|GO:0016567
Rops10g00639 684 FunFam RING-type E3 ubiquitin transferase 359 672 - -
Rops10g00639 684 Gene3D - 504 662 IPR011989 -
Rops10g00639 684 SUPERFAMILY ARM repeat 389 662 IPR016024 -
Rops10g00639 684 SUPERFAMILY RING/U-box 271 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00639 Rops-Chr10 15705255 15707465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00639 14 684 U-box Gene Family AT1G60190 40.962 8.37e-171 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00639 - - tpra:123884536 829.706