Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00637 ATGAACAGAGAATTCCAACGATTCGCAGTTTCATCTCGTTTCATAAGCCCTTTCTCAAAGCCATTCTCTTTGAGGAAGAAAGTCCCATGGTGGTACCAAATCCTTGATCCTCAATCAAAGTTCGTGGCACGATGGAACCGAACCTTCTTGTATGCATGCATTGCTGCTTTGTTCCTTGACCCTCTCTACTTCTATTTCCCTGTTACTGGTGACAAAGCTTGCGTGGAGACAGACATACTCCTCGGCGTTTTCGTCACGCTCTCACGAACCGTCGCTGACCTCTTCTTTCTCTTCCACATGGTCCTCAAGTTTCGAACGGCTTACGTTTCTCCCACCTCTCGCGTTTATGGCAGGAAAGAACTCGTCACTGATCCCCGCTTGATTGCCTCTCGATACCTCAGGTCTGATTTCATTGTTGATCTTCTCGCCACCCTTCCTCTCCCTCAGATTGTGATTTGGTTCGTGATTCCAGCGATGAAAACTTCAACGGCGGCTCACGTAAATCACACACTGTCCCTGATTGTTCTCATTCAATACATTCCACGGTCGTTTCAGATTTTTCCTTTACAACGGCGAATCTTGAAGACTAGTGGTCTCATAGCCAAAACTGCCTTGGCAGGAGCATTGTACAATCTTGGTTTTTACATGCTGGCCAGCCATGTTTTAGGAGCTTCTTGGTATGTGTCATCCATGCAGCGCCAATATGAGTGTTGGATAATAACTTGCAAGAAGGAGATGAATAGAACACACTCTCCATCTTGTAATCCTTCGTTTCTTGATTGTTCTAGCCTTTTCAACCACGAACGCCAAGTTTGGTTCAGACGTACTAAAGTTCTCGCCGATTGTGATGCCCTCAATGACAAAAACCACTTTCAGTTTGGAATGTTTGCTGAAGCTTTTACTGATCATGTCTCTTCCTCAAAATTCTTCCAGAAATACTTTTACTGCCTCTGGTGGGGTTTAAAAAATCTAAGTTCATATGGACAAAATCTTCAAACTAGTACTTATAGTGGTGAAACATTATTTTCAAGTTTAATCTGCATTGCGGGTCTTATCCTGTTTGCACATCTCATTGGTAACATGCAGAATTATCTACAATCTACAACTGCAAGACTTGAAGAGTGGAGACTTAAACAAAAAGATACAGAAGAGTGGATGAATCACCGTCAACTTCCACCAGAATTGCAAGAACGTGTTCGCAGGTTTGTTCAATATAAATGGCTTGCTACTAGAGGTGTAGATGAAGAAGCCATCTTGCGCTCTTTGCCTGTGGACCTTAGACGCCAGATTCAGAGGCACCTCTGTCTTGACATTGTTCGACGGGTTCCTTTTTTTGGCCAAATGGATGATCAGCTCCTAGATGCTATATGCGAACGTCTTGTTTCATCCCTAAACACAAAAGGCTCATACATTCTTATGGAAGGTGATCCAGTAAGAGAAATGCTTTTTATCATTAGAGGACAAGTAGAGAGTTCCACAACTGATGGTGGAAGATCCGGATTCTACAACTCCATCACCCTAAGACCTGGTGATTTTTGTGGAGAAGAATTACTAACATGGGCTTTGATGTCAACCTCTAGTCTTAACCTTCCAACTTCCACTAGAACAGTGAAGACACTCACTGAAGTTGAAGCATTTGCACTTAGAGCTGAGGACCTCAAATATGTATCTAGCCAGTTTAAACGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGGTACTATTCCCATCAATGGAGAGCTTGGGGGGCTAGTTTTATTCAAGCTGCTTGGAGACGTCACCGCAAGAGGAAATTGGCAATGGAGTTGTTAGAGAAAGAGAACTTGTATTATACAAATATGATGGAGCTAGAAGCAGGAGAGGGTTCAATGGGGGACAATGCAGGTCTTTTCCAGAATCTTGGGGCTACAGTTTTGGCTTCTAAATTTGCTGCAAATACTAGAAAGGGGGCAGTTAAGAAAGTAACAATCCCTGATTCTGATAGTTTAAAGATGCCCAAGATGTTCAAGCCAACTGAGCCTGATTTCTCAACATTCCAAGATTAG 2046 0.4296 MNREFQRFAVSSRFISPFSKPFSLRKKVPWWYQILDPQSKFVARWNRTFLYACIAALFLDPLYFYFPVTGDKACVETDILLGVFVTLSRTVADLFFLFHMVLKFRTAYVSPTSRVYGRKELVTDPRLIASRYLRSDFIVDLLATLPLPQIVIWFVIPAMKTSTAAHVNHTLSLIVLIQYIPRSFQIFPLQRRILKTSGLIAKTALAGALYNLGFYMLASHVLGASWYVSSMQRQYECWIITCKKEMNRTHSPSCNPSFLDCSSLFNHERQVWFRRTKVLADCDALNDKNHFQFGMFAEAFTDHVSSSKFFQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSLICIAGLILFAHLIGNMQNYLQSTTARLEEWRLKQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILRSLPVDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKGSYILMEGDPVREMLFIIRGQVESSTTDGGRSGFYNSITLRPGDFCGEELLTWALMSTSSLNLPTSTRTVKTLTEVEAFALRAEDLKYVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRKLAMELLEKENLYYTNMMELEAGEGSMGDNAGLFQNLGATVLASKFAANTRKGAVKKVTIPDSDSLKMPKMFKPTEPDFSTFQD* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00637 681 Gene3D Helix hairpin bin 370 435 - -
Rops10g00637 681 ProSiteProfiles cAMP/cGMP binding motif profile. 444 556 IPR000595 -
Rops10g00637 681 CDD CAP_ED 444 575 IPR000595 -
Rops10g00637 681 Gene3D - 73 368 - -
Rops10g00637 681 SUPERFAMILY cAMP-binding domain-like 373 569 IPR018490 -
Rops10g00637 681 SMART cnmp_10 444 572 IPR000595 -
Rops10g00637 681 Pfam Ion transport protein 45 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops10g00637 681 SUPERFAMILY Voltage-gated potassium channels 36 366 - -
Rops10g00637 681 FunFam Cyclic nucleotide-gated ion channel 1 442 560 - -
Rops10g00637 681 FunFam Cyclic nucleotide-gated ion channel 1 371 435 - -
Rops10g00637 681 Gene3D Jelly Rolls 442 562 IPR014710 -
Rops10g00637 681 Pfam Cyclic nucleotide-binding domain 467 555 IPR000595 -
Rops10g00637 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00637 Rops-Chr10 15671841 15677015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00637 33 676 Ion Channels AT3G48010 66.566 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00637 K05391 - gmx:100783672 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00637 10 15671841 15677015 Rops10g00637 10 15671841 15677015 ECH