Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00634 ATGACTGTTCCAGGAATTATGTCTGATGTAGATGGTAAACAAAGTTATGATGATGATTCAAATGCTTTCTCACCAGAACACCATCGCAAGATGATTATAGTAGCAAATTTTCTTCCTCTCAATGCAAAAAAGGATAACATATCTGGCAGATGGTGCTTTAGTTATGACAAAGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCCCCTAATACTGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTAGATGTGAATGAGCAAGAGAAAGTTTCCCTTCAGTTAATGGAGGAATTCAAATGCTTGCCTACTTTTATTCCTGCAGATGTCCATAAACAATTTTATAATGGATTCTGCAAGCAATATTTGTGGCCTCTATTCCATTATATGTTGCCCATGTATCCAGGCTATTGCAACCGCTTTGATAGGTCATTGTGGCATGCTTATGTTTCCGCTAACAAGATATTTGCCGATAAAGTCATGGAGGTCATTAATCCAGAAGATGATTATGTATGGATTCATGATTATCATCTTATGATTCTTCCAACATTTCTACGGAAGCGGTACAGTCGGGTCAAGCTGGGTTTTTTTCTCCATAGTCCATTTCCTTCATCAGAAATTTATCGAACTCTTCCTGTCAGAGGTGAAATTTTGAAGGCGCTGCTTAATACAGATTTAATTGGTTTTCAAACATTTGATTATGCTCGTCATTTCCTGTCCTGCTGCAGTCGAATGCTTGGCTTGGAATATGAATCCAAAAGGGGTCACATTGGGCTCGAATACTTTGGCCGAACAATATTCATTAAAATATTGCCTGCTGGGATTCACATGGGTCGCATTCAATCTGCCTTAGATCACCCTTCCTCTTATATGAAAGTAAGAGAAATCTATAAACAATTTAAGGGTAAAAAGCTTATTATTGGTGTTGATGATATGGACATATTTAAAGGTGTTAGTTTAAAGTTCTTGGCCATAGAACAACTCTTGCAGCAATATCCAAAACTACATGGTCAATTAGTACTGGTCCAAATTTTAAATCCCCCAAGCAGCAGTGGCAAAGATGTTGAGGAAGCGATGCAGGAGGCCCACATTACTGCAAGAAAGATAAATGAAAGGTTTGGTTTACCAGGTTATGAACCCGTTATCATCATTGATCGTCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCAGAATGCTGCATTGTGAATGCGGTACGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTCTGTAGGCAAGGAAGTTCTAAAATGGATGAAGCCTTAGAAATTGCTTCTGATTCCCCTCGTACAAGTGCACTAGTTGTTTCTGAGTTCATAGGTTGTTCACCATCTCTTAGTGGGGCAATCAGGGTAAACCCGTGGGATATTAATGTTGTAGCTGAAGCATTAAATTTGGCTATCAAAATGTCCAACAAAGAGAAGCAGCTTCGGCATGAGAAGCACTATCGATATGTTAGTTCTCATGATGTGGCTTACTGGTCCCAACATTTTGAGCAAGATCTAGTATTCTCGTGCAAGGATCACTATAGTAAACGTTGCTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTTTGTCCCTCTCTCCTAGTTTCAAGAAGCTATCCATAGACCACATTGTCTCTGCATACAATAGGACAAATTGCAGGGCAATCTTTTTGGATTATGATGGCACAGTTGTACCTCAAGCTTCGATTATTAAAACCCCCAGTCCTGAAGTTGTATATGTGCTAAATGATCTCTGCAGTGACATTAACAACACGGTTTTTATTGTTAGTGGCAGGGGGAAAGATTCTTTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTGGGGAAAACAATCAAGTTGGAAAATGAGTCATGCAGGCACAGATTTTGCATGGAAAAAGATTGCTGAACCTGTGATGCGATCTTATACGGAGGCAACTGATGGATCCTATATTGAGACCAAAGAGAGTGCATTGGTATGGCATTATCATGACGCTGATCCTGATTTTGGATCTTGGCAAGCCATGGAGTTGTTGGATCACCTTGAAAGTGTACTTGCAAATGAGCCTGTAGTTGTTAAAAAGGGACAACATATTGTTGAAGTCAAGCTTCAGGGTATTACTAAAGGGTTTGTTGCACAGGAAGTTTTGTCTACACTAACCAGGAATGGCAAATCACCAGATTTTGTATTGTGCATTGGAGATGATAGATCTGATGAGGATATGTTTGAGAGCATATTAACCAAACCTTACAGTGCAACCTCATCTTCAGCACCAAAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACTTAGATGATACTGTGGATGTGATGATGTTACTTCAGGGTCTTGTTACTGCTTCAGGGTCTAAACCAAGATGTTCTACAGAAACCCCTTCTGAAAAAACAGAAGTCTGTTTTGAGAATATTGTTTGA 2511 0.3935 MTVPGIMSDVDGKQSYDDDSNAFSPEHHRKMIIVANFLPLNAKKDNISGRWCFSYDKDSIFWQLKDGLSPNTDVVYVGSLKVDVDVNEQEKVSLQLMEEFKCLPTFIPADVHKQFYNGFCKQYLWPLFHYMLPMYPGYCNRFDRSLWHAYVSANKIFADKVMEVINPEDDYVWIHDYHLMILPTFLRKRYSRVKLGFFLHSPFPSSEIYRTLPVRGEILKALLNTDLIGFQTFDYARHFLSCCSRMLGLEYESKRGHIGLEYFGRTIFIKILPAGIHMGRIQSALDHPSSYMKVREIYKQFKGKKLIIGVDDMDIFKGVSLKFLAIEQLLQQYPKLHGQLVLVQILNPPSSSGKDVEEAMQEAHITARKINERFGLPGYEPVIIIDRHVPFYEKAAYYALAECCIVNAVRDGMNLVPYKYIVCRQGSSKMDEALEIASDSPRTSALVVSEFIGCSPSLSGAIRVNPWDINVVAEALNLAIKMSNKEKQLRHEKHYRYVSSHDVAYWSQHFEQDLVFSCKDHYSKRCWGIGFGLNFRILSLSPSFKKLSIDHIVSAYNRTNCRAIFLDYDGTVVPQASIIKTPSPEVVYVLNDLCSDINNTVFIVSGRGKDSLSEWFDQCENLGIAAEHGYFIRWGKQSSWKMSHAGTDFAWKKIAEPVMRSYTEATDGSYIETKESALVWHYHDADPDFGSWQAMELLDHLESVLANEPVVVKKGQHIVEVKLQGITKGFVAQEVLSTLTRNGKSPDFVLCIGDDRSDEDMFESILTKPYSATSSSAPKIFACTVGQKPSKARYYLDDTVDVMMLLQGLVTASGSKPRCSTETPSEKTEVCFENIV* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00634 836 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 30 514 - -
Rops10g00634 836 CDD GT20_TPS 30 514 IPR001830 GO:0003824|GO:0005992
Rops10g00634 836 Gene3D Glycogen Phosphorylase B; 22 282 - -
Rops10g00634 836 CDD HAD_TPP 563 804 - -
Rops10g00634 836 Gene3D - 564 796 IPR023214 -
Rops10g00634 836 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 561 678 - -
Rops10g00634 836 Pfam Glycosyltransferase family 20 30 514 IPR001830 GO:0003824|GO:0005992
Rops10g00634 836 Pfam Trehalose-phosphatase 565 798 IPR003337 GO:0003824|GO:0005992
Rops10g00634 836 Gene3D Glycogen Phosphorylase B; 283 499 - -
Rops10g00634 836 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 23 282 - -
Rops10g00634 836 SUPERFAMILY HAD-like 562 810 IPR036412 -
Rops10g00634 836 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 810 IPR001830 GO:0003824|GO:0005992
Rops10g00634 836 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 691 822 - -
Rops10g00634 836 NCBIfam HAD-IIB family hydrolase 563 764 IPR006379 -
Rops10g00634 836 FunFam Alpha,alpha-trehalose-phosphate synthase 284 499 - -
Rops10g00634 836 Gene3D - 644 724 - -
Rops10g00634 836 FunFam Trehalose-6-phosphate synthase 2 645 724 - -
Rops10g00634 836 NCBIfam trehalose-phosphatase 562 810 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00634 Rops-Chr10 15602603 15608991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00634 1 836 Trehalose Biosynthesis Gene Families AT1G23870 66.189 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00634 K16055 - gmx:100787744 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02737 2 46329729 46335030 Rops10g00634 10 15602603 15608991 ECH
Rops10g00634 10 15602603 15608991 Rops10g00634 10 15602603 15608991 ECH
Rops2g03987 2 72886929 72892927 Rops10g00634 10 15602603 15608991 PCT