Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00624 ATGGGTGGCAATGGTAAACACCACCACAGGTGGAAAATCTCGTTCCATCGTTCTTCTTCCTCAAATTCAAAGCTGGAATCAAAGCAACCCCCTAAGGAATTCCTATGCCCGATTTCCGGGTCATTAATGTCCGACCCGGTTGTCGTTTCTTCGGGTCAAACCTTCGAACGCATCGCCGTTCAAGTCTGTAACGACTTAAAATTCTCCCCCAAATTAGACGACGGGATCCGACCCGATTTCTCAACCGTAATCCCTAACTTGGCCATCAAAACTACAATTCTCAAATGGTGCGAGAAATCCGGTACGGAAAACCCTCACCCACCGGATTACGCCGCTGTGGAGAGGGTTGTAAGGGAAGCAATGACGGTGGCGGAGCAGGAGGACCAAATTAGGGTTTCAGAAAAGGAGCTTCTGAAAGCCGTGGCGGATAACCCGCCGGTGATTTTATCACACGCGGTGACCGAGTTAGGGCCCCGAGTCAACCACTTCAACTCGGGGTCTTCCTCTGAGGAATCGGTTATCATTGCAGCGAGTCCTGGAACTCCGTTACCACTCACGATTCGTCCAACGTGTTTCTCTTCTTCTTCATCTTCCTCTATTGAGATCGAAATCCAAAACCCTAGCGTCCCTGCTTCCGAAGAAGAGGAACAATTGTTGAAGAAGCTGAAGAGTAACGAGGTTTCCGACCAAGAAGAAGGTGTGGTTTCATTGAGGAACATCACGAGGAACAGAGAAGATGCTAGGGTTTCTCTTTGCACGCCACGGCTTCTCTCAGCGTTGCGGCCGTTGATACCTTCACGATACGTCGTCGTCCAGGTCAACGCGGTTGCATCATTGGTCAACCTTTCGTTAGAGAAAACGAACAAGGTGAGGATCGTTAGGTCAGGGTTCGTTCCCTTTCTTGTTGATGTTTTGAAGGGAGGATTCAGTGAATCGCAGGAGCACGCTGCAGGTGCACTCTTTAGCTTAGCTTTGAATGATGATAATAAAATGGCGATTGGGGTTCTCGGCGCGTTGGAGCCATTGATGCACGCGTTGAGGTCCGATTCCGAGCGAACTCGGCATGACTCGGCTCTAGCGTTATATCACCTGACTCTGGTTCAGAGCAACCGAGTCAAACTCGTGAAACTCGGGGTGGTCCCCACTTTGCTTTCTATGGTGAAGTCAGGGACTTTAGCGAGTAGGGTGTTGTTGATTCTTTGCAACCTTGCTGCTTTCACGGAGGGTCGTGCGGCGATGCTTGATGCTAACGCGGTGGAGTGTTTGGTGGGGTTGTTGAGGAGGAACGAGTTGGACTCGGATTCGACTCGGGAGAATTGTGTGGCGGCCTTGTATGCGTTGAGTCATGGGAATTTGAGGTTCAAAGGGTTGGCTAAGGAGGCAAAAGCTATGGAGGTTTTGAGGGAGATTGAGGAAACGGGAACTGACAGGGCTAGGGAGAAGGCTAGGAGGGTGTTGCAGATGATGAGGACTGTTGGAGATGGTGAGGATCAACAAGGGTTTGATTTTGATAGCCTTTTTGAATCGCCGAGTGGGTTGGCTAGAACTCGTTACCGAGTTGCTGCTGGTGGTGTCAGGAATACCAACGCAGTCAACTCAACTACATTTTAG 1611 0.5022 MGGNGKHHHRWKISFHRSSSSNSKLESKQPPKEFLCPISGSLMSDPVVVSSGQTFERIAVQVCNDLKFSPKLDDGIRPDFSTVIPNLAIKTTILKWCEKSGTENPHPPDYAAVERVVREAMTVAEQEDQIRVSEKELLKAVADNPPVILSHAVTELGPRVNHFNSGSSSEESVIIAASPGTPLPLTIRPTCFSSSSSSSIEIEIQNPSVPASEEEEQLLKKLKSNEVSDQEEGVVSLRNITRNREDARVSLCTPRLLSALRPLIPSRYVVVQVNAVASLVNLSLEKTNKVRIVRSGFVPFLVDVLKGGFSESQEHAAGALFSLALNDDNKMAIGVLGALEPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVKSGTLASRVLLILCNLAAFTEGRAAMLDANAVECLVGLLRRNELDSDSTRENCVAALYALSHGNLRFKGLAKEAKAMEVLREIEETGTDRAREKARRVLQMMRTVGDGEDQQGFDFDSLFESPSGLARTRYRVAAGGVRNTNAVNSTTF* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00624 536 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Rops10g00624 536 MobiDBLite consensus disorder prediction 1 15 - -
Rops10g00624 536 FunFam RING-type E3 ubiquitin transferase 213 489 - -
Rops10g00624 536 Pfam Armadillo/beta-catenin-like repeat 326 365 IPR000225 GO:0005515
Rops10g00624 536 Pfam U-box domain 31 99 IPR003613 GO:0004842|GO:0016567
Rops10g00624 536 SUPERFAMILY ARM repeat 217 489 IPR016024 -
Rops10g00624 536 FunFam RING-type E3 ubiquitin transferase 11 104 - -
Rops10g00624 536 PANTHER U BOX DOMAIN-CONTAINING 24 490 - -
Rops10g00624 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 106 IPR013083 -
Rops10g00624 536 MobiDBLite consensus disorder prediction 1 31 - -
Rops10g00624 536 SUPERFAMILY RING/U-box 16 106 - -
Rops10g00624 536 SMART arm_5 326 366 IPR000225 GO:0005515
Rops10g00624 536 SMART arm_5 285 325 IPR000225 GO:0005515
Rops10g00624 536 SMART arm_5 406 449 IPR000225 GO:0005515
Rops10g00624 536 SMART arm_5 367 405 IPR000225 GO:0005515
Rops10g00624 536 SMART arm_5 244 284 IPR000225 GO:0005515
Rops10g00624 536 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Rops10g00624 536 Gene3D - 211 488 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00624 Rops-Chr10 15376175 15378320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00624 30 536 U-box Gene Family AT5G65200 59.357 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00624 - - gmx:100784564 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01282 5 26951068 26953614 Rops10g00624 10 15376175 15378320 ECH
Rops10g00624 10 15376175 15378320 Rops10g00624 10 15376175 15378320 ECH