Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00616 ATGTCTTCTTCTACAACCTCTTCTAGACACCACACCTACAATCGGAAACAAAAATCTCTAGGCCTCTTGTGCACCAATTTCTTGAGCTTATATAATAAACAAGGCATTCACTTAATCGGCTTAGACGACGCCGCTTCACGATTAGGTGTTGAAAGACGACGGATCTATGATATCGTTAACGTCTTGGAAAGTGTCGGGGTGCTTGCGAGAAGAGCTAAGAATCAATATACATGGAAAGGCTTTGCTGCAATTCCCGGGGCTTTGCAGGACCTTAAGGACGAGGGTTTGAGGGAGAATCCAATTGTCTTTGATGGTGCCAATGACGGTGCAAAAGTGTCGGATGATGAGGATGAAGAAGAAACAATGTCCAATCCCAGTGAAAGTCAGAATGACAAGTCAAATCCTGATTCCGCCACTCTTGTCAAATCTTCCAAGAATGAAAACAGAAGGGAAAAATCTCTTGCGCTGCTTACCCAGAATTTTGTCAAGCTCTTTGTATGCTCTAATATTGAAATGGTCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCCCATAACACTTCAATAATGAGAACTAAAGTCAGACGCCTATATGATATTGCAAATGTGCTATCCTCCCTGAACCTAATAGAGAAGACCCATACGGCAGAAACAAGAAAACCAGCATTCAGGTGGCTGGGTGTTAAAGGAAAAACATGTAGCAATTCAGTTGACTCAGCTCACAATTCAAGTATCAACGAGTCAAGGAAAAGGATGTTTGGAAATGACGTCACCAACATAAGTTTCAAGAGGAATAAAGTTGATTTGTTCATGAATGAGGACATTCACCAGAACTCGAAAATACAAAATAAACAGGAAAATCATAATTTCCTATCCCAGCTAGAGAAAAGCAACTTAAAACAAGATGCAAAACCTACTTCAAGGCGCTGTCAGTTTGGCCCTTTTGCTCCAGCCTTTGTGCCCAAAGTTGGAGCATCTGAGAATGATGGTGCAAAGCAGATGCATGATTGGGACAGTCTCGCAAATGCCCATCGTCCTCAGTATCAAAACCAAGCATTGAGAGACCTCTTCTCCCATTACATGGAAGCTTGGAAATCTTGGTATTCTGAAGTAGCTGGGAAAAGGCCGTTAAAAATTTTGTAA 1149 0.4186 MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKQGIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLARRAKNQYTWKGFAAIPGALQDLKDEGLRENPIVFDGANDGAKVSDDEDEEETMSNPSESQNDKSNPDSATLVKSSKNENRREKSLALLTQNFVKLFVCSNIEMVSLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSLNLIEKTHTAETRKPAFRWLGVKGKTCSNSVDSAHNSSINESRKRMFGNDVTNISFKRNKVDLFMNEDIHQNSKIQNKQENHNFLSQLEKSNLKQDAKPTSRRCQFGPFAPAFVPKVGASENDGAKQMHDWDSLANAHRPQYQNQALRDLFSHYMEAWKSWYSEVAGKRPLKIL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00616 382 FunFam E2F transcription factor-like E2FE 144 231 - -
Rops10g00616 382 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Rops10g00616 382 FunFam E2F transcription factor 8 10 82 - -
Rops10g00616 382 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
Rops10g00616 382 SMART E2F_TDP_2 149 229 IPR003316 GO:0005667|GO:0006355
Rops10g00616 382 Pfam E2F/DP family winged-helix DNA-binding domain 151 229 IPR003316 GO:0005667|GO:0006355
Rops10g00616 382 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
Rops10g00616 382 SUPERFAMILY "Winged helix" DNA-binding domain 151 230 IPR036390 -
Rops10g00616 382 MobiDBLite consensus disorder prediction 126 142 - -
Rops10g00616 382 PANTHER TRANSCRIPTION FACTOR E2F 5 351 IPR015633 GO:0000978|GO:0006357
Rops10g00616 382 Gene3D - 10 82 IPR036388 -
Rops10g00616 382 Gene3D - 143 232 IPR036388 -
Rops10g00616 382 MobiDBLite consensus disorder prediction 100 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00616 Rops-Chr10 15190253 15195170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00616 10 379 E2F-DP Transcription Factor Family AT3G48160 57.825 9.90e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops10g00616 E2F_TDP 2.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00616 K09391 - gmx:100795252 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00616 10 15190253 15195170 Rops10g00616 10 15190253 15195170 ECH
Rops2g03961 2 72530161 72533306 Rops10g00616 10 15190253 15195170 PCT