Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00610 ATGAGTCATGTAAGCACATATTTTGCGTGGAAAAGGATTGTTGAACCTGTGATGCGATCTTATATTGAGGCAACAAATGACTCCTATATAGAGACCAAAGATAGTGCCTTGGTATGGCAGTATCACAACGCGGATCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGTTCATCTTAAAAGTGTCCTTGCAAATGAGCCTATAGTTGTTAAAAGGGGACAACATATTGTTGAAGTCAAGCTTCAGGGTATTACTAAAGGGTCAGTAGCACAGGAAATTCTGTCTACACTAACCAGGAACGGAAAATTGCTAGATTTTGTACCGTGCATTGGAGATGATAGATCTGATGAGGATATGTTTGAGAGCATATTAACCAAACCTTACAGTGCAACCTCTTCTTCAGCTCCAGAAATATTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACTTGGATGATACTGTGGATGTGATGATGTTACTTCAGGGTCTAAAGCAAGAGAATGTTGAGGCTTTAGCAAATGGGGATTAG 543 0.4052 MSHVSTYFAWKRIVEPVMRSYIEATNDSYIETKDSALVWQYHNADPDFGSWQAMELLVHLKSVLANEPIVVKRGQHIVEVKLQGITKGSVAQEILSTLTRNGKLLDFVPCIGDDRSDEDMFESILTKPYSATSSSAPEIFACTVGQKPSKARYYLDDTVDVMMLLQGLKQENVEALANGD* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00610 180 SUPERFAMILY HAD-like 5 168 IPR036412 -
Rops10g00610 180 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 9 170 IPR001830 GO:0003824|GO:0005992
Rops10g00610 180 Gene3D - 49 178 IPR023214 -
Rops10g00610 180 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 50 178 - -
Rops10g00610 180 Pfam Trehalose-phosphatase 5 157 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00610 Rops-Chr10 15130762 15131581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00610 2 172 Trehalose Biosynthesis Gene Families AT4G17770 59.064 2.09e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00610 K16055 - gmx:100812031 278.87