Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00600 ATGCCTCACACCTCCTCCGCCGCCGACAACACCATCTCCGGCACCGGCGAGATCATGCTCTTCGGGGTGAGAGTCGTAGTCGACTCGATGAGAAAGAGCGTGAGCATGAACAACCTCTCACAATACGAACATCCTCACGACACCCCTAACAACAAAGAAGAAACTCTCGTCGCCGGCTACGTCTCCGCCGATGACGCCGCCGCAGCTCCTCACATCTCCGGCAAGCATCGCAAGCGAGGGATTCCATGGACCGAGGAAGAGCACAAGCTATTCTTGTTGGGATTGCAGAAAGTTGGAAAAGGTGATTGGAGAGGGATCTCAAGGAACTTCGTCAAAACGCGAACGCCAACTCAAGTTGCAAGCCATGCTCAAAAGTACTTTCTCCGTCGCAGTAACCTCACGCGCCGCCGCCGTAGATCTAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAACCCCGATGGCTGAAGAACAGATCCAGCATCAGGATATTGGGTCTGAAACTAGCAACATGAGTGGATTTCGGATGATGCCGATGTATCCGATGATGAGTGTTGGTTCTGGAGTTATTTCAATTGAAGCTGGGAATCCAATTGAAGAACTCACTTTCGGACAAGGAAATATGGAACAACAGAGTGTGCTAACCAAACTAGCATGTCCAATTCCTGTTGGTCCAGATCATAAAGCTTCCACAGTTTCTGATATAACTGCCAGTTTGAGTTCAGCTGTTGATCCACCAAAATTGTCCCTAGGACTATCCTTGTCATCTGGTCAAAGACAGACATCATCATCAAGACATTCAGCTTTACATGCAATGCCATGCTTCAACAATGGAGATAGCATCATAAGTGTTGCTTGA 861 0.4913 MPHTSSAADNTISGTGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPHDTPNNKEETLVAGYVSADDAAAAPHISGKHRKRGIPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLTRRRRRSSLFDITTDTVSATPMAEEQIQHQDIGSETSNMSGFRMMPMYPMMSVGSGVISIEAGNPIEELTFGQGNMEQQSVLTKLACPIPVGPDHKASTVSDITASLSSAVDPPKLSLGLSLSSGQRQTSSSRHSALHAMPCFNNGDSIISVA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00600 286 Pfam Myb-like DNA-binding domain 82 127 IPR001005 -
Rops10g00600 286 FunFam transcription factor MYB1R1 81 132 - -
Rops10g00600 286 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Rops10g00600 286 Gene3D - 81 133 - -
Rops10g00600 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 78 129 IPR006447 GO:0003677
Rops10g00600 286 SUPERFAMILY Homeodomain-like 76 132 IPR009057 -
Rops10g00600 286 CDD SANT 82 127 IPR001005 -
Rops10g00600 286 PANTHER TRANSCRIPTION FACTOR KUA1 9 228 - -
Rops10g00600 286 SMART sant 79 129 IPR001005 -
Rops10g00600 286 ProSiteProfiles SANT domain profile. 83 131 IPR017884 -
Rops10g00600 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 131 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00600 Rops-Chr10 14997957 14999926 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g00600 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00600 - - gmx:778056 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00600 10 14997957 14999926 Rops10g00600 10 14997957 14999926 ECH
Rops2g03953 2 72343353 72345334 Rops10g00600 10 14997957 14999926 PCT