Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00595 ATGGATCCTCCACTTATCAGCGACTCCACATTCTCCTCCGCTTATTCTCTCGCCGAGATTTGGCACGTTGGTGGAATGGTCAATTTAGGTCATAACGGTTTGTCTCCTTTTGATGCTTCTCGTTCTTTGCTTCGAGATGGTTCCGCCGCCGAGGAATCCACCGTCACGGAACAGAGTGGCGGTGGCAAGAGGAAGAAGGAGGTTAGCTCCGAGGAGGAGAGTTCCAAGATGGTTTCAACCACCACCTCTGCAAATGACTTGAATGATTCTGTGAATAAACGGGTAAAATTGGGAGGATCCAACATTGAAAGTGATGGTTTGAAAGCTGAAGCAGAAGCAAGTTCAGCAGTTGGTAATAAGTCAGCTGAACAAAGCACTAAGCCTTCTGAGCCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTTGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAACTTCTTCAGGATTTGGTCCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATCAATTACATCCAGTCGCTGCAGCATCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGAGCCCTACTATTGAAGGGTTTCCTTCAAAAGAAGTTGGTACTCAACCATTTGACATTACTGGAATGATATATGGGTCACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATTGGTGGTGGTTTTGAGAGAGCAACATAA 807 0.456 MDPPLISDSTFSSAYSLAEIWHVGGMVNLGHNGLSPFDASRSLLRDGSAAEESTVTEQSGGGKRKKEVSSEEESSKMVSTTTSANDLNDSVNKRVKLGGSNIESDGLKAEAEASSAVGNKSAEQSTKPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKLLQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRMNMSPTIEGFPSKEVGTQPFDITGMIYGSQAARGYAQGSHPGWLHMQIGGGFERAT* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00595 268 MobiDBLite consensus disorder prediction 106 135 - -
Rops10g00595 268 CDD bHLH_AtBPE_like 135 214 - -
Rops10g00595 268 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Rops10g00595 268 SMART finulus 151 201 IPR011598 GO:0046983
Rops10g00595 268 MobiDBLite consensus disorder prediction 117 131 - -
Rops10g00595 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 215 IPR036638 GO:0046983
Rops10g00595 268 MobiDBLite consensus disorder prediction 45 87 - -
Rops10g00595 268 Gene3D - 142 219 IPR036638 GO:0046983
Rops10g00595 268 Coils Coil 192 212 - -
Rops10g00595 268 FunFam Basic helix-loop-helix transcription factor 142 214 - -
Rops10g00595 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 238 IPR024097 GO:0006355
Rops10g00595 268 MobiDBLite consensus disorder prediction 58 73 - -
Rops10g00595 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00595 Rops-Chr10 14955335 14959038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00595 1 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.690 1.64e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00595 HLH 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00595 - - gmx:100777819 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00595 10 14955335 14959038 Rops10g00595 10 14955335 14959038 ECH