Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00589 ATGGTGCGGTCTCCATGTTGTGAAAAAATCAGTGTCAAAAGGGCAGAAGAAGATGCAAAGATACTTGCATTTGTCTCAAAGCATGGATCTGGTAACTTGACTTCTGTCCCCAAAAAAGCAGGGCTTAAGAGGAGTGGAAAGAGTTGTCGGCTTAGGTGGAGTAACTACCTCAGGCCTGATCTTAAGGATGATAACTTCACACCCCATGAAGAAGATCTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTTTATAATAGCCCAACAACTTCCTGGGAGGACAGACAACGATGTAAAGAACTACTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGGATAGACCCTGTTACTCACAAACCCTTCTCTAAACTCATTGCTGACTATGGAAACATTGGTAGTACCCGAATTGAGTCTGTCAATAAAGACTTCAAGAATGCAATCATGTCAAAATCAGAACCATATCAAACCCTTCCACTAGAATTTAGAAACATCAATGTCCACCACCAACCAAAGCAACCACCAACATCACCACCCAAAATGGAAACAACTGGAAATAACTTCTTATTTAGCACAAATCATAGTGATCTTGCCCAGCTCCAAGCCATACCAACAATGACAGGTGCCTCAAATTGCATAGACTTAGAGAATGAGACCATGCCAACATCTATATTTGGGGAAGGGTGCTTGTCAAAAGCTTCATCACCATCTAATTCTTCTACTTGTTCCACTTCAGCACAAGAAGCCTTACCTATACCCTTCAGTTGGAATGACTTTCTTCTAGAAGATGCTTTTGCACCAGCTTGTGACAACCAAGAACAAGAAATCATGGGTGGATTCTCTTCAAAGGGCTTGGTCATGAGTCAAAATTGGAATAGGAAAGAGGTCAAGTCACAGCAAGCCACAACAAGCAGTGACTCACAATTTTCATCATCTTCTGATATTTCATTTGTAGAAGCTATTCTTGGTCAAGAAAATGAGATGTTTCTAAGTTTTCCTCACCTTATGGAGGAACCATTCAACTACTGA 1038 0.4114 MVRSPCCEKISVKRAEEDAKILAFVSKHGSGNLTSVPKKAGLKRSGKSCRLRWSNYLRPDLKDDNFTPHEEDLIIKLHAAIGSRWFIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGSTRIESVNKDFKNAIMSKSEPYQTLPLEFRNINVHHQPKQPPTSPPKMETTGNNFLFSTNHSDLAQLQAIPTMTGASNCIDLENETMPTSIFGEGCLSKASSPSNSSTCSTSAQEALPIPFSWNDFLLEDAFAPACDNQEQEIMGGFSSKGLVMSQNWNRKEVKSQQATTSSDSQFSSSSDISFVEAILGQENEMFLSFPHLMEEPFNY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00589 345 Gene3D - 64 126 - -
Rops10g00589 345 CDD SANT 65 108 IPR001005 -
Rops10g00589 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 57 IPR017930 -
Rops10g00589 345 SMART sant 62 110 IPR001005 -
Rops10g00589 345 SMART sant 9 59 IPR001005 -
Rops10g00589 345 CDD SANT 15 57 IPR001005 -
Rops10g00589 345 PANTHER F14D16.11-RELATED 1 345 - -
Rops10g00589 345 FunFam Os07g0634900 protein 65 124 - -
Rops10g00589 345 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Rops10g00589 345 ProSiteProfiles Myb-like domain profile. 16 57 IPR001005 -
Rops10g00589 345 Pfam Myb-like DNA-binding domain 65 106 IPR001005 -
Rops10g00589 345 Pfam Myb-like DNA-binding domain 15 57 IPR001005 -
Rops10g00589 345 Gene3D - 14 62 - -
Rops10g00589 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Rops10g00589 345 SUPERFAMILY Homeodomain-like 15 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00589 Rops-Chr10 14879755 14881673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00589 1 345 MYB Transcription Factor Family AT3G28470 40.336 2.32e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g00589 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00589 K09422 - gmx:100795381 424.476