Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00578 ATGGGCATGGATTACTATAACATTCTGAAAGTGAATCGAAACGCAAGCGAAGATGATTTGAAGAAAGCATACAAGAGACTCGCTATGATATGGCACCCTGATAAGAACCCCATTAACAAAAGCGAAGCCGAAGCCAAATTCAAACGAATCTCCGAAGCCTACGATGTTCTCAGTGATCCACAAAAGCGTCAGATCTACGATCTCTACGGCGAGGAAGCACTTAAATCGGGTCAATTCCCGCCACCACCACAATCTTCTTCTTCCTCGTCATCTTCTAGAACCTTCCATAACAATCACCACCACCGTCAGAACCCTACCACCTCGTTCCGTTTCAATCCCCGCAACGCTGATGACATTTACGCTGAGCTTTTTCCTGATGGTGCCGATGTTGGCGGTGGTGGTAGTGGGCCCCGCAGGGATGGGTTTTTCAGGACCTCGAACGGCCCCGCGTTTGGCGGACCGGGAAGGAAGGCCCCTGCGGTGGAGAACACATTGCCGTGTAACTTGGAAGATCTTTACAAGGGTGTCAAGAAGAAGATGAAGATCTCGAGGACTGTCTTCGATGCTTTTGGCAAGTCTCGGAATGTGGAGGAGATTTTGACTATTGAGATAAAACCTGGCTGGAAGAAAGGGACAAAGATTACCTTCCCAGAGAAGGGTAACCAGGAGCCCAGTGTCATCCCTGCAGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTTTATAGAAGGGATGGTAATGATTTGGTGATCAACCAGGAGATAACTCTCCTTGAGGCCCTAACAGGTAAAACCTTGGACCTCATCACCCTGGATGGAAGGAGTCTCATGATCCCATTGACAGATATCGTCAAACCTGGTGCCGAGGTCGTTGTCCCTAATGAAGGAATGCCCATGTCAAAAGAGCCTGGGAGGAAAGGGAATTTGAGAGTTAAGTTTGATGTCAAGTATCCTTCGAGGCTAACTCCAGAGCAGAAATCTGATCTGAGGAGAGTCTTAGGTGGAATCTCATAA 1017 0.4769 MGMDYYNILKVNRNASEDDLKKAYKRLAMIWHPDKNPINKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSRTFHNNHHHRQNPTTSFRFNPRNADDIYAELFPDGADVGGGGSGPRRDGFFRTSNGPAFGGPGRKAPAVENTLPCNLEDLYKGVKKKMKISRTVFDAFGKSRNVEEILTIEIKPGWKKGTKITFPEKGNQEPSVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLITLDGRSLMIPLTDIVKPGAEVVVPNEGMPMSKEPGRKGNLRVKFDVKYPSRLTPEQKSDLRRVLGGIS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00578 338 SUPERFAMILY Chaperone J-domain 3 87 IPR036869 -
Rops10g00578 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Rops10g00578 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Rops10g00578 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Rops10g00578 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Rops10g00578 338 MobiDBLite consensus disorder prediction 79 94 - -
Rops10g00578 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Rops10g00578 338 SMART dnaj_3 3 62 IPR001623 -
Rops10g00578 338 CDD DnaJ 4 59 IPR001623 -
Rops10g00578 338 Gene3D - 159 238 - -
Rops10g00578 338 FunFam DNAJ heat shock family protein 239 334 - -
Rops10g00578 338 Gene3D DnaJ domain 2 132 IPR036869 -
Rops10g00578 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Rops10g00578 338 CDD DnaJ_C 161 322 - -
Rops10g00578 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 334 - -
Rops10g00578 338 FunFam Dnaj homolog subfamily b member 157 238 - -
Rops10g00578 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 240 IPR008971 GO:0006457|GO:0051082
Rops10g00578 338 Pfam DnaJ C terminal domain 162 319 IPR002939 -
Rops10g00578 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 328 IPR008971 GO:0006457|GO:0051082
Rops10g00578 338 MobiDBLite consensus disorder prediction 74 112 - -
Rops10g00578 338 FunFam DnaJ subfamily B member 13 3 134 - -
Rops10g00578 338 Pfam DnaJ domain 4 67 IPR001623 -
Rops10g00578 338 Gene3D - 240 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00578 Rops-Chr10 14692663 14699817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00578 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 7.70e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00578 K09510 - gmx:100781572 538.88