Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00576 ATGGGTGACAAGTCCCAAGTTTTGGAGGCTGTGGTGAAGGAAGCTGTAGATTTGGAGAACATACCCGTTGAGGAGGTTTTAGAGAATCTGAGATGTAGCAAAGAAGGTCTTACCAGTGAGGCTGCTGAGGAGAGGTTGGTCATTTTTGGCCATAACAAGCTTGAAGAGAAAAAGGAGAGGAAGTTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTTTGTCTTGGGTCATGGAGGCTGCTGCTATAATGGCAATTGCACTTGCCAATGGAGGGGGAAAGCCCCCTGATTGGCAAGATTTTGTGGGTATCATCACCTTGCTTGTTATCAATTCAACTATTAGTTTCATTGAGGAGAACAATGCGGGTAATGCCGCAGCTGCTCTCATGGCTCGTCTTGCTCCAAAAGCAAAGGTTCTTCGAGATTGTAGATGGAGCGAGCAAGATGCTTCGGTCTTGGTTCCTGGTGACATAATTAGCATCAAACTTGGAGATATCGTACCAGCTGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGATCAGTCTGCACTTACAGGTGAGTCCCTGCCAGTGACAAAGGGCCCTGGTGATGGTGTGTATTCTGGTTCCACCTGCAAGCAAGGAGAGATTGAAGCTGTGGTCGTTGCAACCGGTGTTCATACCTTTTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTGGGACACTTTCAAAAGGTCTTGACTGCTATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTATTGAGATTATTGTTATGTACCCCATCCAAGATCGGAAGTATCGCCCTGGAATTGATAACCTTCTTGTACTTCTTATTGGGGGAATTCCAATTGCCATGCCCACTGTTCTCTCAGTGACCATGGCCATTGGTTCTCATAGGCTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGAACTTTAACATTGAATAAGCTTACTGTTGACAAAAATCTTATTGAGGTATTTGTGAAAGGAGTGGATCCAGATACTGTTGTTTTGATGGTAGCTCGAGCTTCAAGACTTGAGAATCAAGATGCAATTGATTCTGCCATAGTTGGGATGCTGGCTGATCCAAAGGAGGCACGAGTTGGCATCCAAGAAATACATTTTCTTCCTTTCAATCCTACTGATAAGCGGACAACATTGACTTATATTGATCGTGATGGTAAAATGCATAGAGTTAGCAAAGTGATAGATAAGTTTGCAGAGCGTGGTTTACGATCCCTTGCAGTAGCATACCAGGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGCCCATGGCAGTTTATTGGCCTTATGCCTCTGTTTGACCCACCTAGGCATGACAGTGCAGAAACAATAAGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGTCGCCGCTTGGGAATGGGTACCAATATGTATCCTTCTTCTGCATTGCTTGGGCAGGATAAGGATGAATCCATTTCTGCCTTACCCATTGACGAGCTAATAGAAAAGGCCGATGGATTTGCTGGTGTTTTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTACAAGCTAGGAAACATATCTGTGGAATGACTGGTGATGGAGTGAATGATGCTCCTGCACTCAAGAAGGCAGACATTGGTATAGCTGTTGCTGATGCAACTGATGCAGCTCGGAGTGCATCTGATATTGTTTTAACTGAACCTGGCCTTAGTGTGATTATTAGTGCTGTGTTAACCAGCCGAGCTATCTTTCAGAGAATGAAAAATTATACAATTTATGCTGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTAGCTCTCATATGGAAGTTTGACTTTCCACCTTTTATGGTGCTCATTATCGCCATTCTAAATGATGGTACTATCATGACAATTTCGAAAGATCGGGTAAAACCATCACCTCTGCCAGATAGCTGGAAGCTAGCCGAGATATTTACTACTGGCATTGTGCTCGGATCTTACTTGGCAGTGATGACAGTCATATTCTTTTGGGCAACATACAAAACGGATTTCTTCCCGCGAGTATTTGGAGTCTCTACTCTTGAGAAAACTGCCCATGATGATTTCCGAAAACTAGCCTCTGCAATCTATCTTCAAGTGAGCACAATTAGTCAGGCCCTAATATTTGTGACGCGGTCTCGAGGTTGGTCATATATTGAACGTCCTGGTATTTTGCTGGTGACAGCTTTTGTGGTTGCTCAGCTGATTGCCACTTTGATTGCAGTATATGCAAACTGGAGTTTTGCTGCCATTGAGGGCATAGGTTGGGGTTGGGCTGGTGTAATATGGTTATATAACATAATATTCTACATCCCACTTGACATCATTAAGTTTTTAATTCGATATGCTTTGAGTGGGAGGGCATGGGAGCTTGTCATTGAGCAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGGAAGGAACAAAGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAACCACCTGACACCAAGATGTTCACTGAGCGCACGCATTTCAACGAACTCAATCAAATGGCAGAAGAAGCTAAAAGGAGAGCTGAAATTGCAAGGTTGCGAGAACTGCATACACTAAAGGGTCATGTAGAATCAGTTTTGAAATTGAAGGGGATTGATGTAGACACAATTCAACAATCATACACAGTCTGA 2805 0.4353 MGDKSQVLEAVVKEAVDLENIPVEEVLENLRCSKEGLTSEAAEERLVIFGHNKLEEKKERKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDCRWSEQDASVLVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVVATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQDRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFVKGVDPDTVVLMVARASRLENQDAIDSAIVGMLADPKEARVGIQEIHFLPFNPTDKRTTLTYIDRDGKMHRVSKVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAVMTVIFFWATYKTDFFPRVFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYIERPGILLVTAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIIKFLIRYALSGRAWELVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVLKLKGIDVDTIQQSYTV* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00576 934 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Rops10g00576 934 SFLD p-type atpase 313 619 IPR044492 -
Rops10g00576 934 Gene3D - 883 934 - -
Rops10g00576 934 Pfam haloacid dehalogenase-like hydrolase 327 582 - -
Rops10g00576 934 Gene3D - 328 605 IPR023214 -
Rops10g00576 934 Gene3D - 343 468 IPR023299 GO:0000166
Rops10g00576 934 PANTHER CALCIUM-TRANSPORTING ATPASE 19 867 - -
Rops10g00576 934 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Rops10g00576 934 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 831 IPR023298 -
Rops10g00576 934 FunFam ATPase 4 plasma membrane-type 553 799 - -
Rops10g00576 934 PRINTS H+-transporting ATPase (proton pump) signature 744 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 PRINTS H+-transporting ATPase (proton pump) signature 599 624 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 PRINTS H+-transporting ATPase (proton pump) signature 540 556 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 PRINTS H+-transporting ATPase (proton pump) signature 568 584 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 PRINTS H+-transporting ATPase (proton pump) signature 425 443 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 Coils Coil 885 905 - -
Rops10g00576 934 Gene3D - 96 799 - -
Rops10g00576 934 SUPERFAMILY HAD-like 327 615 IPR036412 -
Rops10g00576 934 SFLD C1.7: P-type atpase like 313 619 - -
Rops10g00576 934 FunFam Plasma membrane ATPase 462 616 - -
Rops10g00576 934 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Rops10g00576 934 PRINTS P-type cation-transporting ATPase superfamily signature 591 603 - -
Rops10g00576 934 PRINTS P-type cation-transporting ATPase superfamily signature 463 474 - -
Rops10g00576 934 PRINTS P-type cation-transporting ATPase superfamily signature 568 587 - -
Rops10g00576 934 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Rops10g00576 934 PRINTS P-type cation-transporting ATPase superfamily signature 485 495 - -
Rops10g00576 934 NCBIfam HAD-IC family P-type ATPase 103 364 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 NCBIfam HAD-IC family P-type ATPase 543 656 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g00576 934 FunFam Plasma membrane ATPase 134 218 - -
Rops10g00576 934 CDD P-type_ATPase_H 36 825 IPR006534 GO:0008553|GO:0016020|GO:0120029
Rops10g00576 934 Gene3D - 134 218 - -
Rops10g00576 934 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Rops10g00576 934 Pfam E1-E2 ATPase 132 310 - -
Rops10g00576 934 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00576 Rops-Chr10 14655070 14661528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00576 1 934 Primary Pumps ATPases AT5G62670 90.167 0.0 1734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00576 K01535 - gmx:100782459 1707.96