Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00573 ATGGGTCAAGTAGCATGGCTGTTGTTGGTGATTTCCACCACTGTTTTCTGTCCTTCTTCTCTTGCTCTTACACAAGATGGACTCACATTGTTGGAAATCAAAAGCACTTTGAATGACACTAGGAATTTCCTCAGCAACTGGCAAGAGACTGATGAGTCTCACTGTAAATGGACTGGTATCACTTGTCACCCCGGTGAACAACGAGTTCGCTCAATAAATTTGCCTTACATGCAACTTGGGGGAATTATATCTCCCAGCATTGGAAAACTCAGTAGACTACATAGATTGGCACTTCATCAGAATGGCTTACATGGAATTATCCCCAATGAAATTAGCAATTGTACTGAGCTTAGAGCACTGTACTTGAGGGCTAATTATTTCCAAGGAGGCATCCCATCAAATATTGGAAATCTTTCTTATTTACATATACTGGATTTATCAAGCAACTCATTAAAGGGTGCTATACCTTCTTCTATTGGCCGTCTCACACGTCTGCGAGTTCTGAACTTGTCAACTAATTTCTTTTCTGGTGAAATCCCTGATGTTGGAATACTAAGCACCTTTGGGAACAATGCGTTTATTGGGAATTTAGATCTTTGTGGGCGGCAAGTTCAAAAACCATGTAGGACATCACTTGGTTTCCCTGTGGTGCTACCACATTCTGAAAGTGATGAAGCTGCAGTCCCTACCAAAAAATCTTCACATTATGTGAAGTGGGTGCTAATTGGTGCAATATTAATGATGGGCATTGCACTTGTCATAATCCTTTCATTACTCTGGATTTGTTCACTATCTAAGAAGGAGAGAGCTGCTAGGAGATACAAGGAAGTCAAGAAACAAGTCAATCCAGAATCAAGTAGAAAAGATGGCACAAAACTAATGACCTTCCATGGTGATCTTCCATACACATCATCTGAGATCATAGAAAAGCTGGAGTCTCTTGATGAAGATGACGTGGTAGGGTCTGGAGGATTCGGTACTGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGATAGAAGCCGTGAAGGTTCTGATCAGGGGTTTGAAAGGGAACTAGAGATCTTGGGTAGCATCAAGCACATCAATCTAGTAAACCTGCGTGGTTACTGCAGACTTCCATTTACAAAGCTTCTAATCTATGATTATTTGGCCATGGGCAGCTTAGATGATCTCTTGCATGAAAATACTGAACAATTACTGAATTGGAGTACTCGCCTAAAGATAGCCCTTGGTTCTGCCCGTGGTTTGGCTTACTTACACCATGACTGCTGCCCAAAAATTGTGCACCGTGACATAAAATCCAGCAACATCCTTCTTGATGAAAACATGGAGCCTCGTGTCTCTGATTTTGGCCTTGCAAAGCTTTTGGTTGATGAAGATGCCCATGTTACAACAGTGGTTGCTGGAACATTTGGCTATCTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAGGTCAGATGTGTATAGCTTTGGAGTTCTATTGCTAGAACTTGTAACTGGAAAGAGACCTACAGATCCTTCCTTTGTAAAGAGAGGTCTAAATGTTGTTGGTTGGATGAACACGTTTCTAAGAGAAAATAGATTCGAAGATGTGGTAGACAAAAGATGCACTGATGCAGATTGGGAATCCGTTGAAGTAGTTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCAGATGACCGTCCATCAATGAACCAGGTATCACAGTTGTTGGAACAAGAGGTCATGTCTCCTTGTCCAAGTGATCTTTACGAGTCGCATTCAGATCACTGTTAA 1809 0.4179 MGQVAWLLLVISTTVFCPSSLALTQDGLTLLEIKSTLNDTRNFLSNWQETDESHCKWTGITCHPGEQRVRSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGIIPNEISNCTELRALYLRANYFQGGIPSNIGNLSYLHILDLSSNSLKGAIPSSIGRLTRLRVLNLSTNFFSGEIPDVGILSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHSESDEAAVPTKKSSHYVKWVLIGAILMMGIALVIILSLLWICSLSKKERAARRYKEVKKQVNPESSRKDGTKLMTFHGDLPYTSSEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPFTKLLIYDYLAMGSLDDLLHENTEQLLNWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATERSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMNTFLRENRFEDVVDKRCTDADWESVEVVLELAASCTDANADDRPSMNQVSQLLEQEVMSPCPSDLYESHSDHC* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00573 602 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 390 594 - -
Rops10g00573 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Rops10g00573 602 ProSiteProfiles Protein kinase domain profile. 314 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00573 602 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 185 - -
Rops10g00573 602 Pfam Protein kinase domain 317 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00573 602 Gene3D Ribonuclease Inhibitor 24 210 IPR032675 -
Rops10g00573 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 67 583 - -
Rops10g00573 602 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Rops10g00573 602 SMART serkin_6 314 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00573 602 Gene3D Transferase(Phosphotransferase) domain 1 390 591 - -
Rops10g00573 602 SUPERFAMILY Protein kinase-like (PK-like) 293 582 IPR011009 -
Rops10g00573 602 Gene3D Phosphorylase Kinase; domain 1 274 389 - -
Rops10g00573 602 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Rops10g00573 602 SUPERFAMILY L domain-like 24 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00573 Rops-Chr10 14625956 14632145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00573 5 591 Receptor kinase-like Gene Family AT2G35620 48.983 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Rops10g00573 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00573 - - gmx:100805042 1107.43