Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00564 ATGTACTACTTGATATGTCCTGCACAAGCAATCACAATTAAAGCTGAGGAGCGAGAAGATGGCAGCTGCAGGACAACTCGGTATGATATTGACATGACCAAGTGCATCTATTGTGGATTTTGTCAAGAGGCATGCCCTGTTGATGCCATTGTCGAAGGGCCAAACTTTGAATTTTCTACAGAAATTCATGAGGACACTCATCAAGCCCTTTGTCTCCAAAGGCAAGGACTTGCCACTCCCACCTTGTTTCATGGCTCAACTTTTCAAGCCAACATTCCCAGCAAGCAAAGAGAGGATGCTGGGAAAACAAGCCATCTTTTTCCACAAGGAGAGTACCATGCTAACTTGAGGAGGCTTGTTCTTCATACCTTCATGCCTGAAGCCATAAAAAACATCGTCCCTGACATTGAATCAATTGCCAAACACTGTCTCAAAGCATGGGAAGGCCGTTTGATCATCACTTTCCTTGAAATGAAAACGCTCACCTTCAATGGTGCTCTACTTTCAATTTTTGGAAAAGATGAAATTCTACACACACAGCGTTTGAAATAG 552 0.4312 MYYLICPAQAITIKAEEREDGSCRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTEIHEDTHQALCLQRQGLATPTLFHGSTFQANIPSKQREDAGKTSHLFPQGEYHANLRRLVLHTFMPEAIKNIVPDIESIAKHCLKAWEGRLIITFLEMKTLTFNGALLSIFGKDEILHTQRLK* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00564 183 Gene3D Cytochrome P450 101 179 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00564 183 SUPERFAMILY Cytochrome P450 70 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops10g00564 183 Gene3D - 3 100 - -
Rops10g00564 183 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 35 46 IPR017900 -
Rops10g00564 183 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 26 55 IPR017896 -
Rops10g00564 183 Pfam 4Fe-4S binding domain 29 50 IPR017896 -
Rops10g00564 183 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 5 67 IPR010226 GO:0016020|GO:0016651|GO:0051539
Rops10g00564 183 SUPERFAMILY 4Fe-4S ferredoxins 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00564 Rops-Chr10 14485397 14487605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00564 88 183 Cytochrome P450 AT4G19230 57.292 2.29e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00564 K03941 K09843 gmx:100170674 136.346