Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00559 ATGGCGGCGGGTGGGAATGTTTCTTCAAATTTATGTACTTTGCTTAAGAATCAAACTGTTCCTTGCACTTCTCAGCCTCTTGATTCTCTTTTCCTTTCTTCCTCTTATCATTTTCTCGGTTCAAGATCTATAGTGAGTTTTGAAGATGTTCAAGGAGGGAAGGGGTGTAATGGCTCTTTCTTCCGTCATTATGATCATGATGAAAATGTGGATGAAGACATGGACGAATACTTGCATCAACCTGGGAAGAAACGTAGGCTCTCGGTGGAACAAGTTCATTTCCTTGAGAAGAGCTTTGAGGAAGAGAACAAGCTTGAACCCGAAAGGAAAACTAGACTAGCCAAGGAACTTGGTTTGCAACCTCGGCAAGTTTGGTTTCAAAATCGTAGGGCTCGATGGAAGGCAAAACAATTGGAGAAGGATTATGATTCCTTGCTAGCTAGCTATAACGATCTTAAAGCCAATTATGACAATCTTTTGAGGGAGAAGGATAAATTGAAAGGCGAGGTGTCAAGACTCACTGAACAGATGCTTGGAAGTCAGAAACAAGAGGGAAATTCAGAACAAGCTGAAACAAATGGATTGCTGGAGCCACTGGAAAAGCCTTTAACTGATTCAGCTTCTGAAGGTGAAGGATCCAAAGTTTCAATTGGAGGTTGTAAACAGGAAGACAATAGTTCAGCAAAAAGTGACATGTTTGATTCAGACAGCCCGCATTACACGGATGGTGTTCACTCTTCACTGCTTGAAACAGGTGATTCATCCTATGCATTTGAACCTGATCTGTCTCAGGAAGAAGAAGACAACTTGAGCAAGATCCTGTTACCTCCTTACATCTTCCCTAAACTTAAGGATGATGATTACTCTGACCCGCCTCATAGTTCATGCAATTTTGGATTTCAGGAGGAAGATCATGCCATTTGGTCCTGGTCTTACTGA 939 0.4185 MAAGGNVSSNLCTLLKNQTVPCTSQPLDSLFLSSSYHFLGSRSIVSFEDVQGGKGCNGSFFRHYDHDENVDEDMDEYLHQPGKKRRLSVEQVHFLEKSFEEENKLEPERKTRLAKELGLQPRQVWFQNRRARWKAKQLEKDYDSLLASYNDLKANYDNLLREKDKLKGEVSRLTEQMLGSQKQEGNSEQAETNGLLEPLEKPLTDSASEGEGSKVSIGGCKQEDNSSAKSDMFDSDSPHYTDGVHSSLLETGDSSYAFEPDLSQEEEDNLSKILLPPYIFPKLKDDDYSDPPHSSCNFGFQEEDHAIWSWSY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00559 312 MobiDBLite consensus disorder prediction 176 270 - -
Rops10g00559 312 Gene3D - 86 130 - -
Rops10g00559 312 SUPERFAMILY Homeodomain-like 65 138 IPR009057 -
Rops10g00559 312 ProSiteProfiles 'Homeobox' domain profile. 78 136 IPR001356 GO:0003677
Rops10g00559 312 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Rops10g00559 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 230 IPR045224 GO:0003700
Rops10g00559 312 Pfam Homeodomain 83 134 IPR001356 GO:0003677
Rops10g00559 312 Gene3D - 131 179 - -
Rops10g00559 312 MobiDBLite consensus disorder prediction 176 193 - -
Rops10g00559 312 SMART HOX_1 80 140 IPR001356 GO:0003677
Rops10g00559 312 CDD homeodomain 81 137 IPR001356 GO:0003677
Rops10g00559 312 MobiDBLite consensus disorder prediction 239 253 - -
Rops10g00559 312 FunFam homeobox-leucine zipper protein ATHB-6-like 86 130 - -
Rops10g00559 312 Coils Coil 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00559 Rops-Chr10 14379557 14381760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00559 81 257 Homeobox Transcription Factor Family AT3G01470 47.872 1.38e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops10g00559 Homeodomain 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00559 - - gmx:732618 466.463