Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00556 ATGGATACTAAAAAGTTCAATCTGCTCTTCTTTTGTGTGTTTTATCTTGCTATATTCCCTACCCTTAGGGCTGACATAGCTCAATTTGACCAAGAATGGCTGAAAAGATCTCGGGAAGCCAGAAAAGCAGCAATCCATGCTTTCAAGCGAGACCCTGAGGAAGTTGCTAATGATTTCAATATGCACGTCGACGAGGCTTTGAAAGGCTCCAACAGCACAAGAAGGGGCTTAGCCAAATACAATGGTCCATGCATGGCCACAAACCCCATTGATCAATGCTGGAGGTGTGATCCAAATTGGGCTAAACACCGCAAGAAGCTAGCAGATTGTGTTTTAGGCTTTGGCAAAGGCACAACCGGAGGCAAAAATGGCAAATTCTATATTGTCACAGATCCATCTGACAATGACCTCGTGAATCCGAAACCAGGAACCTTGAGACATGCAGTGATTCAGAAAAGGCCATTATGGATCACTTTTGCACGTAACATGATCATCAAACTGAAAGGGGAGCTTCTAGTAGCAAATGACAAGACAATAGATGCACGTGGTGTCAATGTTCATGTTTGCTACGGTGCCCAAATAACTTTGCAATATGTGAAAAATATCATCATTCATGGGCTGCACGTCCATGATATTAAGAGAGCTAGTGGTGGTCTCATAAGAGACTCAGTGAATCACTATGGATACCGCACGGTTAGTGATGGTGATGGGATTTCATTGTTTGGAGCCACAAATGTTTGGATAGATCATGTTTCAATGACCAATTGTGATGATGGCCTAATTGATGTCATCATGGCATCCACAGCCATTACCATCTCCAATTGCCATTTTACCCATCAAAATGATGTTATGTTATTTGGTAGCAGTGACAGCTACTCAGGTGATAAAATCATGCAAGTAACTCTGGCTTTCAACCATTTTGGGAAAGGATTGATACAGAGGATACCAAGGTGCAGATGGGGCTTCTTTCATATTGTTAACAATGACTACACTCATTGGCTCATGTATGCCATAGGTGGTAGCAAAAATCCCACCATTATCAGCCAGGGAAACCGATTTATTGCTCCTCCAAACCCAAATGCAAAAGAAGTGACAAAGAGGGACTATGCACCTGAAAGTGTGTGGAAGAAATGGAATTGGAGATCAGAGAATGATTTAATGATGAATGGAGCCTTCTTTGTTCAGTCTGGAAAAAAGGTTAATCTTCCCAAGAGTGGCATCACTGCAAAGCCTGGGAAATTCGCATCCAGACTCTCTCGCTTTGCAGGTCCTCTGAAATGTATTAGAAATAAGCCATGTTGA 1302 0.4232 MDTKKFNLLFFCVFYLAIFPTLRADIAQFDQEWLKRSREARKAAIHAFKRDPEEVANDFNMHVDEALKGSNSTRRGLAKYNGPCMATNPIDQCWRCDPNWAKHRKKLADCVLGFGKGTTGGKNGKFYIVTDPSDNDLVNPKPGTLRHAVIQKRPLWITFARNMIIKLKGELLVANDKTIDARGVNVHVCYGAQITLQYVKNIIIHGLHVHDIKRASGGLIRDSVNHYGYRTVSDGDGISLFGATNVWIDHVSMTNCDDGLIDVIMASTAITISNCHFTHQNDVMLFGSSDSYSGDKIMQVTLAFNHFGKGLIQRIPRCRWGFFHIVNNDYTHWLMYAIGGSKNPTIISQGNRFIAPPNPNAKEVTKRDYAPESVWKKWNWRSENDLMMNGAFFVQSGKKVNLPKSGITAKPGKFASRLSRFAGPLKCIRNKPC* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00556 433 Gene3D - 87 426 IPR012334 -
Rops10g00556 433 Pfam Pectate lyase 197 353 IPR002022 -
Rops10g00556 433 PANTHER PECTATE LYASE 18-RELATED 40 431 IPR045032 GO:0030570
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Rops10g00556 433 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Rops10g00556 433 SUPERFAMILY Pectin lyase-like 79 427 IPR011050 -
Rops10g00556 433 SMART amb_all 162 359 IPR002022 -
Rops10g00556 433 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00556 Rops-Chr10 14321499 14324208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00556 1 433 Polysaccharide Lyase AT3G01270 54.737 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00556 K01728 - gmx:100801864 676.781