Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00554 ATGCAGCTCTTGCCTATATTAACATTGAAAGATGGGCTTTGTTTGCTGACCCAGAACATAGAAAGCAAATCAAGAAAGAAAGAAAAGCTATCTTCTTTGCTTATGGAGGTTGGTTCAGAAAGATCTGGTCATGAAGGTCAAGGAGCCAAGGTTGAGAAGAGAAGTGAATCTAGTTTTGGTGATGGTGAAGATCGTCGTGAACAAGAGATTGTTGTCCAGGAGCCACCCAAGACTAATATTGAAAGATCCACGGTAGGGACCAGGCCAAATGCATCTCCAACCAAAATGGAAGAGGTTGATGAACTTGAAAATGTCAAAGCCGAAATGGGAGGAGTGATGGAAGAAAATCAACGATTAAAGATGTGTTTGAATCGAATAATGAATGATTACCGCACACTGCAAATGCAATTCCACAATATAGTTGAACAAGAATCAAAAAATTCTTCTGATAAAGTGAACAATAACCATCAACAAATAATAGAAGAATCAGAGCTAGTTTCCCTCAGTCTTGGAAGACTTCCAAGTAATCCAAGAAACAATGAGAAAGCTAAAGTCTCCAGACCATTGAAAGAGGAAGAATATAAAGAAGGCTTGGCTCTTGGACTGGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAACATTTGCCAAATCCAAAAAGCCCTACCAATAGTTCTGAAGTACCAAAGGAAGAAGCTGGGGGGACTTGGCCACCCAGTAAGGTGCACAAGACAATTAGGGTCAGAGAAGAGGATGAAGTTTCCCAACAAAATCCTGCAAAGAAAACTAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCTGTGAGAAAGCAGGTGCAAAGATGTTCTCAGGACATGTCCATTTTAATCACAACCTATGAAGGGACCCACAGCCACCCTCTTCCTCTTTCAGCTACCGCAATGGCTTCCACCACTTCTGCAGCTGCTTCCATGCTTTTGTCTGGCTCATCAAGCTCCAACACTGGAACAATACCTTCAACAGCCATGACAACCACTGCTGCAGATCTTCATGGAATGAACTGTTATCTATCAGATGCTTCCAAATCAAAGCAATTCTATCTGTCTCATCCTTCACTATCATCATCACCTTCACACCCAACCATCACTCTTGACCTCACTTCCAATCCATCCTCATCCTCATTTCCTTTTGGTAATAGATTTATTTCAAACTACAACCCCCCAAGATGCCCTTCTTCCACAAGTCTGAACTTCAGTTCCTCTGAATCCAATGCAATGTCTTGGAGCAATGGGCTCCTCAGCTACAATACTTCTCAACCATACAACAACAGGAACCTCCTTAGCACCATAAACCTTGCAAGACAACCAATGGAAAATAATATTTACAATTCCTACATGCAAAGGAACAACAATCCAACCCCTGCTCAACATTCTCTTCCAGACACTATAGCTGCAGCAACAAAAGCAATCACAGCTGACCCCACTTTTCAATCAGCTTTGGCAGCAGCACTCACATCAATAATTGGCACTGGAAGCACTCAAGGAAACCAGAATGTTGGAGAAATTTTGGTTCAAAAATTGAAATGGGGTGAGCTCTTTTCTTCATCTTCTACCTTGCCTGCTTCCACTTCCACTTCCACTTCCAAAGTCACTGGCTGTGCCTCAAGCTTCTTGAATAAAGCACCTGCTAGTAGTAATACACAACAAACGGGAAGTTTGATGTTTCTACAGCCACCTTTGCCATTTTCTAGCCCCAAAAGTGCATCTACATCTCCTGGTGATAATAAAGATAACACCAATTAA 1893 0.4205 MQLLPILTLKDGLCLLTQNIESKSRKKEKLSSLLMEVGSERSGHEGQGAKVEKRSESSFGDGEDRREQEIVVQEPPKTNIERSTVGTRPNASPTKMEEVDELENVKAEMGGVMEENQRLKMCLNRIMNDYRTLQMQFHNIVEQESKNSSDKVNNNHQQIIEESELVSLSLGRLPSNPRNNEKAKVSRPLKEEEYKEGLALGLDCKFETSKSGSTTEHLPNPKSPTNSSEVPKEEAGGTWPPSKVHKTIRVREEDEVSQQNPAKKTRVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCSQDMSILITTYEGTHSHPLPLSATAMASTTSAAASMLLSGSSSSNTGTIPSTAMTTTAADLHGMNCYLSDASKSKQFYLSHPSLSSSPSHPTITLDLTSNPSSSSFPFGNRFISNYNPPRCPSSTSLNFSSSESNAMSWSNGLLSYNTSQPYNNRNLLSTINLARQPMENNIYNSYMQRNNNPTPAQHSLPDTIAAATKAITADPTFQSALAAALTSIIGTGSTQGNQNVGEILVQKLKWGELFSSSSTLPASTSTSTSKVTGCASSFLNKAPASSNTQQTGSLMFLQPPLPFSSPKSASTSPGDNKDNTN* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00554 630 MobiDBLite consensus disorder prediction 209 232 - -
Rops10g00554 630 FunFam probable WRKY transcription factor 31 263 340 - -
Rops10g00554 630 Gene3D WRKY domain 262 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g00554 630 MobiDBLite consensus disorder prediction 170 191 - -
Rops10g00554 630 MobiDBLite consensus disorder prediction 43 68 - -
Rops10g00554 630 Pfam WRKY DNA -binding domain 279 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g00554 630 MobiDBLite consensus disorder prediction 591 630 - -
Rops10g00554 630 SMART WRKY_cls 278 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g00554 630 MobiDBLite consensus disorder prediction 209 243 - -
Rops10g00554 630 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 91 548 IPR044810 GO:0003700
Rops10g00554 630 MobiDBLite consensus disorder prediction 24 68 - -
Rops10g00554 630 ProSiteProfiles WRKY domain profile. 273 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g00554 630 SUPERFAMILY WRKY DNA-binding domain 271 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00554 Rops-Chr10 14296200 14300665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00554 109 544 WRKY Transcription Factor Family AT5G15130 44.167 1.46e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops10g00554 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00554 - - gmx:100804403 685.641