Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00550 ATGGGGAAATCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAATAAACAAGAGGCAGTGCTTGCTTCTCATGTGTTGGATAATGGTTTGGCTTTTGATCGAACTCCCAATAAGATTGCCAGAAATGAGGAAGACCTAGAACTGGAGAATGAGGAATCAGAAAATCCTTCACCTGGGAATCAAGAAGTATACATCATGGGATCTGCGGACCAAGATGCACCACCTGATCCTGAGAAAATCAGGCTGGAGGAAGCAGCAGCAAAGGCCCAGGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGCTACATTATGCTGCATGTATGGGATTGTAAAGTTACAAGCACTTGTTCGTGGAGGAAGGGTTAGACAGTCTGATGTTGGATTTGAAATCCGTGAGAAGTGCATTCTATTTAAACCTTTGGATGGCAAACTTGGGGAGCCAGTCGGTGTTGTCACAAAAATTTCAAAACTGTCAGCAAATATTTTCATCTGCAAGCTTCTTGCTTCATCGACTACAATAATGGCCCTGCACCTGCAATATGTTGGTGGGGACCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCATACTTTTGGAAACCAATTTCCCAACCCAAGAAAATCCCAGACTCTAAATCTCAGAGAAAGCAGGGTAATGCTTCAATTGGAGAAGCTCAAATTAACAAATCAAAACGTACCCACAGGAAGCTTCCTACTGCGAATTTTGAATCAGTCCCAGTGCAAACAAATCCTGAAACTGAGAAACCAAAACGTAATTTCAGGAAAATCTCAAGCCTACCGTCGGATCCAGAGCAGGAAAATCCACAATCTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTACTCTGTCAGAAGTTGAATATGAGACCCCAAAGCAGCATTTGGAAAAGGCAACAGTTATTGCAGGTCATGCTGTTTCAGAACCAGGGGTCATTACTTCTAATGGAAAGATCAAGAAGGAAGCAACATTGACCATTTCCAATGTACCTGATGTCGAAATCACTCCAAGACCATCTGATAACAAGGAGGTGTCTGACATTCCAAGCAGTAATCAAGTGACTGTAGAATCAAAGCCCCTGACAGAGACTACGATTAAAGATAAAAACACTTCTGGTGATGAAGTTAAAAATGAGCTGATCAATCTACCAGAGACTATTTCTAAAGATGAAAGCACTCCATTAACAAATGGAGATTTGTGTCATAAGGAAGATCTAACAGGTAGCGAAAACCAGAAATCTACCCGGAAAGCCTCAACTTTGGCAAAGCAGGAGCATGCAGAAAATGGTTTACAGAATAGTCCAACATTACCAAGTTATATGGCTGCAACTGAATCTGCCAAGGCAAAGTTGAGGACACAAGGGTCCCCAAGGTTTGGGCAAGATGGAAGTGAGAGAAACAACCATTCTGGGCGACATTCTCTGCCATCTTCAACTAACAGCAAAATCAATTCACATTCACCTAGGACACACAGATCAGTTCAATCGGGTGGCACAGGGGGCCATAGAAGTGACAGAACTATGCCATCTTCTAGAGGTGGGAATGGGAAGGTAATTCAAGCAGAGTGGAGGAGGTGA 1755 0.4279 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNKQEAVLASHVLDNGLAFDRTPNKIARNEEDLELENEESENPSPGNQEVYIMGSADQDAPPDPEKIRLEEAAAKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGGRVRQSDVGFEIREKCILFKPLDGKLGEPVGVVTKISKLSANIFICKLLASSTTIMALHLQYVGGDPNSVLSWLERWSASYFWKPISQPKKIPDSKSQRKQGNASIGEAQINKSKRTHRKLPTANFESVPVQTNPETEKPKRNFRKISSLPSDPEQENPQSELEKVKRNLRKIHNPVVENATLSEVEYETPKQHLEKATVIAGHAVSEPGVITSNGKIKKEATLTISNVPDVEITPRPSDNKEVSDIPSSNQVTVESKPLTETTIKDKNTSGDEVKNELINLPETISKDESTPLTNGDLCHKEDLTGSENQKSTRKASTLAKQEHAENGLQNSPTLPSYMAATESAKAKLRTQGSPRFGQDGSERNNHSGRHSLPSSTNSKINSHSPRTHRSVQSGGTGGHRSDRTMPSSRGGNGKVIQAEWRR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00550 584 MobiDBLite consensus disorder prediction 402 420 - -
Rops10g00550 584 Pfam Protein of unknown function (DUF4005) 482 563 IPR025064 -
Rops10g00550 584 PANTHER IQ-DOMAIN 5-RELATED 1 540 - -
Rops10g00550 584 MobiDBLite consensus disorder prediction 250 323 - -
Rops10g00550 584 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Rops10g00550 584 MobiDBLite consensus disorder prediction 484 500 - -
Rops10g00550 584 MobiDBLite consensus disorder prediction 59 93 - -
Rops10g00550 584 MobiDBLite consensus disorder prediction 391 584 - -
Rops10g00550 584 MobiDBLite consensus disorder prediction 516 573 - -
Rops10g00550 584 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Rops10g00550 584 Gene3D - 97 145 - -
Rops10g00550 584 SMART iq_5 121 142 IPR000048 GO:0005515
Rops10g00550 584 SMART iq_5 98 120 IPR000048 GO:0005515
Rops10g00550 584 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Rops10g00550 584 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00550 Rops-Chr10 14239897 14247546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00550 1 584 IQD Protein Family AT1G74690 44.623 2.87e-126 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00550 - - gmx:100786022 843.958