Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00548 ATGAGCACCACTCGCAGCGGTTTGGTGCTGGTGTTGCAACAATACAAAGCACTGTTGAAGAAAAACGTGTTATTATCATGGCGAAACAAGAGAGCAACTTTGCTCCAATTAATCTCCCCTCTCATCTTCATCTTCCTCATTTTCGCTATTGACAAAGCAACCAAGGCTCAATCCTCAACCTCTTCATCACTCAAAAGCGTTAAAGACCCTCCCATTCAACCCATTCCTTCAATCCCTCCTTGTGAAACCAAATTCTTCATCAAACTTCCATGTTACGATTTCGTTTGGAGCGGTGACCAAAACCCCAAAATTCAAACCATTGTCGATCGAATCATGATTAATAACCCTGGAAGACCGATACCTACCACCAAGGTTAAGTCGTTTAAGGATAAAAATGATGTGGATGCGTGGCTTTTTGCTAATCCTATGTTTTGTCCTGGTGCGCTTCATTTTACGGTCAAAAACGACACCGTTATAAGCTATGGTTTGCAGACGAATTCAACTAGTCTTCCTTATCGAGGGAAATATGAGGACCCTACGGAGTCGTTTCAACTCCCTCTTCAGCTCGCTGCCGAACGTGAAACTGCAAGATACTTGATTGGAGATACAAATTTCAGTTGGAATGTGTTTTTGGGTGAATTCGCGCATCCAGCTAAGAGTTCTTTCTCTGCCATGGGTACAATAGGTCCAGCATTTTTTCTTGCAATTGCTATGTTTAATTTTGTGCTTCAGATGAGTTCTTTGGTGACAGAGAAAGAGCTTAAGCTTCGTCAGGCAATGAACGTGATGGGTCTTTATGATTCTGCTTACTGGTTCTCATGGCTTACATGGGAGACAGTTGTTACAATCCTTTCATCCCTTCTCATAGTTCTATTTGGAATGATGTTTCAGTTTGCTTTTTTCTTGAAAAACAGTTTCGCAATCTTGTTCTTTTTGTTCTTCCTATTTGAACTCAATATGACTGGCTTGGCCTTCATGTTATCTGCTTTCATTAATAAATCTTCTTCAGCGACAACTGTGGGCTTCTCCATATTTATTGTGGGCTTTATGACTCAGCTAGTGGTACAAGCAGGAGTGCCTTACACAGAAACCATCTCCAAAACTTTCCGAAATGTCTGGTCATTGTTCCCACCTAATCCTTTTGCTCAAGCTCTGCAGGTGCTTTCGAATGCGGTTGATACTGCTGAAGATGAGGGTGTTAGCTGGAGTAAGCGAGGAGAATGTGCTCTTACTGATATGGGCTGTGTGATAACAATTAATGATATTTATAAATGGCTTCTGGCTACATTCTTTGTATGGTTTGTACTGGCCATCTACTTCGACAATATAATCCCCAATGCATATGGTGTGAGGAAATCCTTGTTATACTTTCTACATCCCGGTTATTGGATTGGAAAAGGAGGACAAAAAGTTAAAGATGGTGGGGTTTGTAGTTGCTTCGATTCAGCCCCACATGTAGAGCATAGTACACCAGATGATGAAGATGTCCTTGAAGAAGAAAACACAGTGAAACAGCAACAAATACAAGGTGTGGTTGATGCAAATATTGCTGTTCAGCTACATGGCATTGTGAAGACATATCCTGGTGCATTACACCTTAGTTGTGGTTGTTACTGTTGCTGTTGCTGTAAATGTAAAAGAAGTCATCCTTACCATGCTGTCAAGGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTTTAGGACCCAATGGAGCTGGAAAAACTACCGCTATTAATTGTTTGACAGGGATAACTCCTTTAACTGATGGAGATGCATTGATTTATGGGCATTCCATCCAAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTTTGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTTGCTAGTGTTAAAGGCCTGTCACCATCTTCTATAGATTCAATTACACAATCGTCGTTGGCAGAGGTGAGACTCTCAGATGCAGCCAAAGTGAGAGCTGGAAGTTTCAGTGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCAACTACTGGTATGGATCCAATAACTAGGAGGCATGTGTGGGATATAATTGAAAATGCAAAAAAAGGGCGTGCCATTGTTCTTACAACACACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAGGGGAAGGCTCCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTACTGGTTTTATTGCTAATATAAGCTTCCGTGGAAACAATACTGAACACAGTCCTGCCAATGGAGATGCAGTATCCGCAGAACATCGTGAGGCTGTGAAGAAATTCTTTAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACAATAACTTCCTAACTTTTGTGATTCCTCATGACAAAGAGGCACTTCTGACGAAATTTTTTTCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACGTCCAGCTTGGTCTAACAACCCTTGAAGAAGTTTTCTTGAACATTGCAAAGCAAGCAGAGCTAGAAAGTGCTGCAGCTGAAGGGAGACTAGTGGATCTGACCTTAACATCTGGAGAGTCTGTGCAGATTCCTGTAGGAGCTAGATATGTGGGAATCCCAGGAACAGAATCTGAAGAAAACCCTACAGGGTTTATGGTAGAAGTATACTGGGAGCAAGATGATACTGGTGCCTTATGTATTGCTGGCCACTCACAGAAAGTTCCAATTCCCCCTAGTGTCCAACTATCACCATCTCCTCCTGCAGGACACCCTAGAAATTTAGGTCCGTCTGGATCAGTTCAGGGGGTTGTGATCGATCCGAGTCAAGTTAGTTCGGTCATTTTTCCGCAATAA 2925 0.4222 MSTTRSGLVLVLQQYKALLKKNVLLSWRNKRATLLQLISPLIFIFLIFAIDKATKAQSSTSSSLKSVKDPPIQPIPSIPPCETKFFIKLPCYDFVWSGDQNPKIQTIVDRIMINNPGRPIPTTKVKSFKDKNDVDAWLFANPMFCPGALHFTVKNDTVISYGLQTNSTSLPYRGKYEDPTESFQLPLQLAAERETARYLIGDTNFSWNVFLGEFAHPAKSSFSAMGTIGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMNVMGLYDSAYWFSWLTWETVVTILSSLLIVLFGMMFQFAFFLKNSFAILFFLFFLFELNMTGLAFMLSAFINKSSSATTVGFSIFIVGFMTQLVVQAGVPYTETISKTFRNVWSLFPPNPFAQALQVLSNAVDTAEDEGVSWSKRGECALTDMGCVITINDIYKWLLATFFVWFVLAIYFDNIIPNAYGVRKSLLYFLHPGYWIGKGGQKVKDGGVCSCFDSAPHVEHSTPDDEDVLEEENTVKQQQIQGVVDANIAVQLHGIVKTYPGALHLSCGCYCCCCCKCKRSHPYHAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPLTDGDALIYGHSIQSSTGMSNIRKLIGVCPQFDILWDALSGQEHLQLFASVKGLSPSSIDSITQSSLAEVRLSDAAKVRAGSFSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIVLTTHSMEEADILSDRIGIMARGRLRCIGTSIRLKSRFGTGFIANISFRGNNTEHSPANGDAVSAEHREAVKKFFKNHLDVVPKEENNNFLTFVIPHDKEALLTKFFSELQDREEEFGISDVQLGLTTLEEVFLNIAKQAELESAAAEGRLVDLTLTSGESVQIPVGARYVGIPGTESEENPTGFMVEVYWEQDDTGALCIAGHSQKVPIPPSVQLSPSPPAGHPRNLGPSGSVQGVVIDPSQVSSVIFPQ* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00548 974 SMART AAA_5 563 747 IPR003593 GO:0016887
Rops10g00548 974 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 493 866 IPR026082 GO:0016020|GO:0055085|GO:0140359
Rops10g00548 974 ProSitePatterns ABC transporters family signature. 672 686 IPR017871 GO:0005524|GO:0016887
Rops10g00548 974 MobiDBLite consensus disorder prediction 933 957 - -
Rops10g00548 974 Pfam ABC-2 family transporter protein 32 439 IPR013525 GO:0016020|GO:0140359
Rops10g00548 974 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 518 770 IPR003439 GO:0005524
Rops10g00548 974 CDD ABC_subfamily_A 518 758 - -
Rops10g00548 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 752 IPR027417 -
Rops10g00548 974 FunFam ABC transporter A family member 2 508 778 - -
Rops10g00548 974 Pfam ABC transporter 557 699 IPR003439 GO:0005524
Rops10g00548 974 Gene3D - 544 772 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00548 Rops-Chr10 14228227 14235015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00548 567 791 Calmodulin-binding Proteins AT2G36910 22.174 2.18e-09 59.7