Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00547 ATGGAAAATGAAAACACATCAAACGAACCTGCAACAAGTTTCTGGACTCAAGCAAACGCACTCCTCAGAAAGAATCTAACCGTTCAGAAAGGATATGTGAAGACAAACATTAGACTCATATCGTTCCCATTTTTGCTGTGTCTGTTGCTGTTACTTCTCCAAAAGCTGGTAGATAACCAAATAGACAAGGCTAAATACAAGTGTGGATGCATTTGTAGCAAAAGAGAAGGGGATCAGTGTGTGGAACAAGAGTGTGGGATTCAGTATTCGGATTTGGACCAAGTTGGCACATGTCGTATTCTTAATCCTCCAGAATGGCCTCCTTTGTTGCAATTGCCAGCTCCAGAATATCGAGCTGTGAGAACGGAGCTTTTTCCGTTTTCTGATTTTCCAAACACATCTTGCAGAAGGAATGGCTCATGTCCTGTTACTATGCTCTTTACTGGCACTAACCATTCTTTTGGACAAATTTTGTCAGGGAATATGATCCCCAGTACCCTTAATATAAATAACTCAGATATCATGGGTACTTTGGCAACAAATGTGTTTGGAACAGAATCAGAGACAGAGTACACCAATTTTCTGGAACCTGGTTTCTTTTCGGATCTTCCTATTTATTATCTACAAAGTCAGTGCACAAGGAACAATACCTTCTCCATTAATGTCCAGATGTCAAACATTAGCAGGCAGCAAGAGGTTAGATGTGCTCAGGGTTTAAGTTTATGGCGCAATAGTTCTTCTGAGGTGAACGATGAGCTATATAAAGGTTATAAAAAAAGTAACACAGAGAGACAGATCAATGAGATAGCTGCAGCTTATGATTTTCTAAATTCAAATGAGAAGATATTTAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACCGGCTTTGCTCCTATTGCACTGGCGCGTGTTCCTCGCTCTGTAAATCTGGTATCAAATGCCTACCTTCAGTTTCTGCTGGGACCTGGTACCAACATGCTGTTTGAGTTTGTAAAGGAAATGCCAAAACCGGAGATCCCAAATACTTTTGATTTGGCTTCTCTTCTTGGTGGTCTCTTCTTTTCATGGGTCATCCTGCAACTTTTCCCTGTTGTCCTGACATCGCTAGTGTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTACTTTCTTGCCATATCCATTATCTACATGCTTTGTTTTGTGATATTTGGCTCAGTCATAGGTTTAAAATTTTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATCTACAAATTTCACTGGCATTTCTATTGGCTTCCCTGTTTTCAAATGTTAAGACTGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTATTCCAATTTTTTGTTCAAGATACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGTTATATCCTGGTTTTGCCTTATATCGTGGGTTATATGAATTTTCACAATCTTCCTTCAGTGGAGATGCTTTGGGGACTCATGGTATGCGGTGGGGAGATCTGAATGATGGCACAAATGGCATGAAAGAGGTCTTAGTTATCATGTTCGTGGAGTGGCTATTGGTTACTTTTTTTGCTTATTACATGGATCAAGTTTTGTTATTAGGAAGATGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAGAAAAAGCCTAGTTCATCTTTTCGGAAGCCTAGTTTCCAAAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCTGATGTCAATCAAGAGAGGGAGAAGGTAGAGCAACTGCTACTTGAACCAACTATTAATCAAGTCATTGTATGTGACAACCTGAGAAAGGTCTATCCAGGGAGGGATGGTAACCCAGAGAAATTTGCAGTGAGAGGGTTGTCCCTTGCTTTGCCTCATGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGCACAGCATTTGTTCAAGGTCTTGACATAAGAACTGATATGAATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAACTTGACAGGAAGAGAGCACCTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAACACAAGCGGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTCCATGGAGGAGTTGCTGATAAACATGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAGAGTTGTTTATATGGATGAGCCGGGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTCAAGCGTGCAAAACAGGACCGTGCTATCATTCTCACAACACATTCCATGGAGGAGGCAGAAGTCCTATGCGATCGACTAGGAATATTTGTAGATGGTAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATGACAACATCCACGGATCATGAAAAGGATGTAGAGAACTTAGCACATCAGCTCTCCCCAAATGCTAAGAAGATTTACCATATCTCTGGTACACAGAAGTTTGAGCTGCCAAAAGACGAGGTTAGAATAGCCAATGTATTCGGAGCTATTGAGATTGCAAAGAGAAACTTCACAGTTTCTGCATGGGGTTTAGCTGACACAACATTGGAAGATGTTTTCATTAAGGTTGCACGTGAGGCTCAGGCATTTGACAACTTATCATAA 2853 0.4027 MENENTSNEPATSFWTQANALLRKNLTVQKGYVKTNIRLISFPFLLCLLLLLLQKLVDNQIDKAKYKCGCICSKREGDQCVEQECGIQYSDLDQVGTCRILNPPEWPPLLQLPAPEYRAVRTELFPFSDFPNTSCRRNGSCPVTMLFTGTNHSFGQILSGNMIPSTLNINNSDIMGTLATNVFGTESETEYTNFLEPGFFSDLPIYYLQSQCTRNNTFSINVQMSNISRQQEVRCAQGLSLWRNSSSEVNDELYKGYKKSNTERQINEIAAAYDFLNSNEKIFNVSIWYNSTYKNDTGFAPIALARVPRSVNLVSNAYLQFLLGPGTNMLFEFVKEMPKPEIPNTFDLASLLGGLFFSWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISIIYMLCFVIFGSVIGLKFFTMNDYSIQFVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQSSFSGDALGTHGMRWGDLNDGTNGMKEVLVIMFVEWLLVTFFAYYMDQVLLLGRWKSPLFFLKGFQKKPSSSFRKPSFQRQGSKVFVQMEKPDVNQEREKVEQLLLEPTINQVIVCDNLRKVYPGRDGNPEKFAVRGLSLALPHGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTDMNGIYTSMGVCPQHDLLWENLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKHAGKYSGGMKRRLSVAISLIGDPRVVYMDEPGTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGTYVFTMTTSTDHEKDVENLAHQLSPNAKKIYHISGTQKFELPKDEVRIANVFGAIEIAKRNFTVSAWGLADTTLEDVFIKVAREAQAFDNLS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00547 950 Gene3D - 620 896 IPR027417 -
Rops10g00547 950 SMART AAA_5 658 841 IPR003593 GO:0016887
Rops10g00547 950 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Rops10g00547 950 Pfam ABC transporter 650 793 IPR003439 GO:0005524
Rops10g00547 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 856 IPR027417 -
Rops10g00547 950 CDD ABC_subfamily_A 627 853 - -
Rops10g00547 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 865 IPR003439 GO:0005524
Rops10g00547 950 Pfam ABC-2 family transporter protein 284 555 IPR013525 GO:0016020|GO:0140359
Rops10g00547 950 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 595 945 IPR026082 GO:0016020|GO:0055085|GO:0140359
Rops10g00547 950 FunFam ABC transporter A family member 7 617 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00547 Rops-Chr10 14197883 14207144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00547 604 852 Calmodulin-binding Proteins AT2G36910 22.308 9.80e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00547 - - gmx:100805474 1632.46