Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00545 ATGGGAAATTGCCTTGGAGCACGTTCCAAGGTTGATAACAACTCTGTGAGCTCTCACCCCATTTTTGCAGATGCTACAAAAGTTCCTGGTAGAAGCATCCATTCCTTGGCTCTTTGGAGTCCAACACTATATGGATACCATGATGAGGGTAAACTTGATGACATACTTCCCTCCCCATATTTAAAAGCCTTCACATTCAATGATCTGAAGAATGCAACAAGAAACTTTCCTCCTGATAGTCTGATAGGACAAGGGGGATTTGGTCATGTCTATAAGGGGTGGATTGATGAACAATCTTTTAGAGCTACAAGGCCTGGATCTGGAATGATTGTAGCTGTGAAGAAGCTTGTACCTGAAGGTTCTCAAGGCCATAAGGAGTGGCTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAGCTTTTTGGATACTGCTTGGATGGCGATAACCGACTTCTAGTCTATGAGTACATGCCCAAAGGCAGCTTGGAGAATCATCTATTTTGCAGGGATGCACGTCCACTTCCTTGGGCTACAAGGATCAAAGTTGCCATTGATACTGCTCAAGGTCTCACCTTTTTACATGAGTCTGAGCAACCAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTTGGAATTTAATGCAAAACTATCAGACTTTGGTTTGGCCAAAGCAGGGCCCACTGGCGATCTTACTCATGTTTCTACTCAAGTCCTGGGTACTCAAGGCTATGCAGCTCCTGAATATATTGCTACAGGTCGGTTGACTGCAAAATGTGATGTCTATAGCTTTGGAGTTGTGCTATTGGAACTACTTTCAGGTCGTCGTGCAGTTGATAAAACAAAACATGGAGTGGAACAAAATCTAGTAGATTGGGCAAGACCCTATTTGGTAGATAGGAGGAAGTTGTTCAGGATCATGGACACCAAGTTGGAAGGTCAGTACCCTCACAGGGCAGCTTACATAACTGCAATTCTTGCATTACAATGTATTAGTGAGGTCAAAATCAGACCTCAAATGTCTGAGGTTTTGGCTACATTGGAACAGCTACCAGCTATGAGACATTCAGTTCCAGCAAGTCCATGTAGGAAATCCATGTCAAGCCCCAATGCAAAATCCCCTTTGACACATAATTATCATCATCATTCAGTGGACACCAAGTCTGTGTCTAGTTACATAAGTGACATCTCTCTTAGGTCCCCTCTGGCATCACCAATAAAATCTCCATTTATACAATCTCCAAGAAGTGCATTTGCTCTTCAAGTATAG 1293 0.423 MGNCLGARSKVDNNSVSSHPIFADATKVPGRSIHSLALWSPTLYGYHDEGKLDDILPSPYLKAFTFNDLKNATRNFPPDSLIGQGGFGHVYKGWIDEQSFRATRPGSGMIVAVKKLVPEGSQGHKEWLSEVNYLGQLHHPNLVKLFGYCLDGDNRLLVYEYMPKGSLENHLFCRDARPLPWATRIKVAIDTAQGLTFLHESEQPIIYRDFKASNILLDLEFNAKLSDFGLAKAGPTGDLTHVSTQVLGTQGYAAPEYIATGRLTAKCDVYSFGVVLLELLSGRRAVDKTKHGVEQNLVDWARPYLVDRRKLFRIMDTKLEGQYPHRAAYITAILALQCISEVKIRPQMSEVLATLEQLPAMRHSVPASPCRKSMSSPNAKSPLTHNYHHHSVDTKSVSSYISDISLRSPLASPIKSPFIQSPRSAFALQV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00545 430 SUPERFAMILY Protein kinase-like (PK-like) 60 385 IPR011009 -
Rops10g00545 430 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Rops10g00545 430 CDD STKc_IRAK 82 358 - -
Rops10g00545 430 PANTHER OS01G0588500 PROTEIN-RELATED 35 358 - -
Rops10g00545 430 Gene3D Phosphorylase Kinase; domain 1 58 161 - -
Rops10g00545 430 ProSitePatterns Protein kinases ATP-binding region signature. 82 115 IPR017441 GO:0005524
Rops10g00545 430 Pfam Protein tyrosine and serine/threonine kinase 81 288 IPR001245 GO:0004672|GO:0006468
Rops10g00545 430 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 162 367 - -
Rops10g00545 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Rops10g00545 430 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00545 430 MobiDBLite consensus disorder prediction 369 385 - -
Rops10g00545 430 MobiDBLite consensus disorder prediction 366 387 - -
Rops10g00545 430 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00545 Rops-Chr10 14187479 14192274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00545 62 355 Glycoside Hydrolase AT3G07070 53.356 8.98e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops10g00545 PK_Tyr_Ser-Thr 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00545 - - csv:101217629 555.829