Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00543 ATGGATTCTCTGAAAATGTTCAAAGGTTATGGCAAAGTGGAAGAAAAACACAAACACAACAACCTCGAAGATCAACAACAACAACATCGTAAAACCTCAAAACCCCTTGTCGTCGCAACAATTTCAATCTTCGTCATCCTTCTTCTCACTCTCACTTTGGCTTTCTCCCTCATCCACCACACCAGTACCGAGTCACCGAAACCACAACAACAACAACAAACCCCCAACTCGTCCGAGTCAATCCGAGTCGTCTGCAATGTGACTCGCTACCCTGACTCGTGCATCGCCGCTGTATCCTCCTCCGCACAAAACCCCACCGACCCAGAAGCGATTCTCAAGCTCTCTCTTAACGCCTCCGTCGGAGAACTCGAAAAGCTTGCGTCTTTGCTCGGAAACTCCAAGGGATCCGCTCTTGTGGACTGCAAGGACCAGATTGATGACTCGCTGAGTCGACTCAATGACTCGCTGTCGGCGATGGCGGCGGTTCCTGAAACGCTGACGGAGGTAAAGATCAGCGACATTCAAACGTGGGTTAGTGCGGCGGTTACGGATCAACAAACGTGCCTCGATGGGTTGGAGGAGGTTGGGTCTGTGAATGAAGTTACAAAAGTGAAGAACATGATGAACAAATCAAGTGAGTACGTTAGCAACAGCTTGGCCATTGTTGCTAACATGCGAACCTTGTTACGCCAATTCAATATTCCACTCCATTGA 714 0.4888 MDSLKMFKGYGKVEEKHKHNNLEDQQQQHRKTSKPLVVATISIFVILLLTLTLAFSLIHHTSTESPKPQQQQQTPNSSESIRVVCNVTRYPDSCIAAVSSSAQNPTDPEAILKLSLNASVGELEKLASLLGNSKGSALVDCKDQIDDSLSRLNDSLSAMAAVPETLTEVKISDIQTWVSAAVTDQQTCLDGLEEVGSVNEVTKVKNMMNKSSEYVSNSLAIVANMRTLLRQFNIPLH* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00543 237 SMART PMEI_2 76 221 IPR006501 GO:0004857
Rops10g00543 237 FunFam Pectinesterase 77 226 - -
Rops10g00543 237 CDD PMEI-like_3 84 227 - -
Rops10g00543 237 MobiDBLite consensus disorder prediction 1 31 - -
Rops10g00543 237 PANTHER PECTINESTERASE INHIBITOR-LIKE 46 221 - -
Rops10g00543 237 NCBIfam pectinesterase inhibitor domain 44 225 IPR006501 GO:0004857
Rops10g00543 237 Pfam Plant invertase/pectin methylesterase inhibitor 80 221 IPR006501 GO:0004857
Rops10g00543 237 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 226 IPR035513 -
Rops10g00543 237 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 225 IPR035513 -
Rops10g00543 237 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00543 Rops-Chr10 14128119 14129062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00543 1 237 Carbohydrate Esterase AT1G53840 37.838 2.63e-37 135