Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00538 ATGATGGAAGGAGGTGATGATTTCCACCACCATCACCACCGACAAAACTTCCCATTCCAACTTCTTGAGAAGAAGGAAGACCAAGAAGCTGCTTCATGCTCCACCTCATCATCATCATCATCATCATCCTTAGCCATCATCTCCTCCGAACCAACCACTTCAAACACCGCAGTCGCCGAACCTTCCAACAAAAAACCGCCGCCAAAGAGAGCCACCACCAAAGACCGCCACACCAAAGTTGACGGCCGCGGCCGTAGAATTCGAATGCCGGCACTCTGCGCCGCCAGAGTCTTTCAGCTTACCCGCGAACTCGGCCATAAGTCTGACGGTGAAACCATAGAGTGGCTCCTCCAACAAGCTGAACCCTCCGTCATCGCCGCCACCGGAACCGGCACCATCCCTGCTAACTTCACATCCCTCAACATCTCTTTAAGAAGCTCAAGCTCCTCCATGTCCGTCCCATCTCACCTTCGATCCTCTTACTTCAACCCTAATTTCTCTCTCCCTCCACCGAGAACCACCTTCTTCTCCGACAACACCAACACTTCCTCCTCCACCGCCGCCACCACCACGCTCCTCAATTCTCAATCCTTAATATCCGCCGCCAGTGCTGCCTTTCAAGCCAAGCATGAACTACGCGGTGGCGCGTTGGAGTCAAGTAGTGCAGGGACAATTCCGGCGAGTCATGCTCAGATTCCGGCTAATATATGGATGTTGGCAAATTCTAATAATCAAGGTATGAGTGGTGGTGGTGGTGGTGACCCTCCTCCTATATGGTTGAATAACAGTTCCTTTTATAGAGGAACTGGTTCTAGTGGGTTGCATTTCATGAACTTTCCAACCCCTATGGCCTTGTTACCTGGTCAACAATTAGGGTCTTCTGTTGGAAACATAAATGAAGGACATTTAAGCATGCTTGCTGGACTAAACCCTTATCGGCCGATGATCGGAGTTTCGGAGTCTCAGGCAAGTGGGTCACAATCACATCACGATGGAAGCCATGATCGGCGTGATAACAACACAAGTCATCACTCATAG 1038 0.5058 MMEGGDDFHHHHHRQNFPFQLLEKKEDQEAASCSTSSSSSSSSLAIISSEPTTSNTAVAEPSNKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSSSSMSVPSHLRSSYFNPNFSLPPPRTTFFSDNTNTSSSTAATTTLLNSQSLISAASAAFQAKHELRGGALESSSAGTIPASHAQIPANIWMLANSNNQGMSGGGGGDPPPIWLNNSSFYRGTGSSGLHFMNFPTPMALLPGQQLGSSVGNINEGHLSMLAGLNPYRPMIGVSESQASGSQSHHDGSHDRRDNNTSHHS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00538 345 MobiDBLite consensus disorder prediction 1 85 - -
Rops10g00538 345 Pfam TCP family transcription factor 72 198 IPR017887 -
Rops10g00538 345 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 335 IPR005333 GO:0003700
Rops10g00538 345 MobiDBLite consensus disorder prediction 31 61 - -
Rops10g00538 345 MobiDBLite consensus disorder prediction 329 345 - -
Rops10g00538 345 MobiDBLite consensus disorder prediction 316 345 - -
Rops10g00538 345 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Rops10g00538 345 MobiDBLite consensus disorder prediction 67 85 - -
Rops10g00538 345 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00538 Rops-Chr10 14075529 14077128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00538 11 345 TCP Transcription Factor Family AT1G69690 46.006 2.86e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops10g00538 TCP 5.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00538 - - gmx:100809154 362.073