Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00531 ATGGGGAGACCACCTTGCTGTGATAAAATTGGGATTAAGAAAGGGCCTTGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCTGGGAATTGGAGATCAGTTCCCACCAGGACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGTAATTTCACTGATCATGAAGAAAAAATGATACTCCACCTCCAAGCGCTTCTGGGTAACAGATGGGCTGCAATAGCTTCCTATCTTCCACAGAGGACAGACAATGACATAAAGAACTATTGGAATACCCATTTGAAGAAAAAAATGAAGAAGATTCAAAGTGGAACTGAAGATGGTCATGAAAAAGAAGGACACTCTAGTTCACAGGCAAAGGGTCAATGGGAGAGAAGGCTTCAAACAGATATTCACATGGCCAAGAAAGCTTTGTGTGAAGCACTGTCTCTTGACACACCAACACATGTTTTGCCAGAGACTAATAAGACCTCCAATTACCATCATAACCCTGCAACCAACACCACAACACCAAACCAAGCATCCCCATATGCATCAAGCACTGAAAACATAGCTAGATTGCTTGACAACTGGATGAAGAAATCCCCAAACTCAGTTGATTCAAATTCAGGAAATTCCTCCTTCAGCAACATGCTAACCACAGGATCAAGTTCTAGTGAAGGAACACAGAGCACCATCACACGCACACCTGATCATGGTTTTGACTCTTTGTTGAGCTTCAATTCATTCAACTCTGGTCGTTCTCAATCTGTGTCAGTTGAAGAAAAAACCAACTTGAAAATGGAGGCTGGCCCTTTTCAAGATGAAAGCGAGCCAAACCAGGAGACACAAGTCCCTCTCATGTTGCTGGAGAATTGGCTTTTTGATGATGGGGCAGCTCAATGCCATGATCTAATGAACATGTCACTGGAGGAAAGTGCTGCAGGGTTGTTTTAG 990 0.4323 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTRTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMILHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKMKKIQSGTEDGHEKEGHSSSQAKGQWERRLQTDIHMAKKALCEALSLDTPTHVLPETNKTSNYHHNPATNTTTPNQASPYASSTENIARLLDNWMKKSPNSVDSNSGNSSFSNMLTTGSSSSEGTQSTITRTPDHGFDSLLSFNSFNSGRSQSVSVEEKTNLKMEAGPFQDESEPNQETQVPLMLLENWLFDDGAAQCHDLMNMSLEESAAGLF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00531 329 CDD SANT 69 112 IPR001005 -
Rops10g00531 329 MobiDBLite consensus disorder prediction 212 249 - -
Rops10g00531 329 Gene3D - 68 155 - -
Rops10g00531 329 CDD SANT 16 61 IPR001005 -
Rops10g00531 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops10g00531 329 SMART sant 66 114 IPR001005 -
Rops10g00531 329 SMART sant 13 63 IPR001005 -
Rops10g00531 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops10g00531 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops10g00531 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops10g00531 329 MobiDBLite consensus disorder prediction 211 249 - -
Rops10g00531 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops10g00531 329 FunFam Transcription factor MYB30 68 126 - -
Rops10g00531 329 FunFam MYB-related transcription factor 13 66 - -
Rops10g00531 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops10g00531 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops10g00531 329 MobiDBLite consensus disorder prediction 168 197 - -
Rops10g00531 329 MobiDBLite consensus disorder prediction 118 141 - -
Rops10g00531 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Rops10g00531 329 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00531 Rops-Chr10 13833504 13835391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00531 1 329 MYB Transcription Factor Family AT5G62470 51.989 6.00e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g00531 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00531 K09422 - gmx:100807020 457.988