Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00530 ATGAAGAAGAGACAGGTGGTGGTAAAGAACACTTCATCCTCGGTGATGAGAAATATTAGATATGGGGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTTGATGGTTGCAGAGAATTCATGGCTAGCACAGGGGAAGGAACTAATGAGGCTCTTATGTGTGCTGCTTGTGGCTGCCACAGGAACTTTCATAGAAAGGAAGAGCAAACTGAGGTAGTATGTGAGTATTCTCCACCTAATTCTGGTCGTTGA 261 0.4444 MKKRQVVVKNTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGTNEALMCAACGCHRNFHRKEEQTEVVCEYSPPNSGR* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00530 86 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
Rops10g00530 86 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 72 - -
Rops10g00530 86 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Rops10g00530 86 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00530 Rops-Chr10 13774699 13774959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00530 1 84 Zinc finger-homeobox gene family AT1G18835 71.910 1.96e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops10g00530 ZF-HD_dimer 9.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00530 - - gmx:100785967 164.466