Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00519 ATGGCCACTGTTACCACACAGGCTTCCGCCGCTATTTTCCGGCCATGTGCTTCAAAATCGAGGTTTCTCACTGGATCTTCCGGTAAACTGAACAACAGGGAAGTGGCTATTAGGTCAATTAGGTCTCTTCCTTCTGCCTCTTTCAAGGTTGAAGCCAAGAAAGGAGAGTGGTTACCAGGCTTGGCCTCCCCAGCTTACCTCGATGGCAGTCTTCCTGGTGACAATGGTTTTGATCCTCTGGGACTTGCTGAGGACCCAGAGAACTTGAAGTGGTATATTCAAGCTGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGGATGTTACTCCCAGAGGTCTTCACCAAATTTGGAATCATCAATGTCCCTAAATGGTATGATGCTGGGAAAGAAGAATACTTTGCTTCATCCTCAACCCTCTTTGTGATTGAGTTCATTTTGTTCCACTATGTTGAGATAAGAAGATGGCAAGACATTAAGAACCCTGGTTGTGTCAACCAAGATCCCATCTTCAAGCAATACAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGCATTTTTAACCCCTTGAACTTTGCACCAACACTTGAGGCCAAAGAAAAGGAACTTGCTAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTCATAGTTCAACACAATGTGACAGGCCAAGGACCATTTGATAACCTCTTGCAGCACCTGTCAGACCCATGGCACAACACCATAGTCCAAACACTGAGTGGCAACTGA 762 0.4659 MATVTTQASAAIFRPCASKSRFLTGSSGKLNNREVAIRSIRSLPSASFKVEAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTKFGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGQGPFDNLLQHLSDPWHNTIVQTLSGN* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00519 253 FunFam Chlorophyll a-b binding protein, chloroplastic 64 243 - -
Rops10g00519 253 Gene3D Chlorophyll a/b binding protein domain 64 243 - -
Rops10g00519 253 Pfam Chlorophyll A-B binding protein 64 223 IPR022796 -
Rops10g00519 253 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 17 249 IPR001344 GO:0009765|GO:0016020
Rops10g00519 253 SUPERFAMILY Chlorophyll a-b binding protein 54 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00519 Rops-Chr10 13570523 13572065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00519 42 251 Chloroplast and Mitochondria Gene Families AT3G61470 51.598 3.59e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00519 K08910 - gmx:100802922 479.559