Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00518 ATGGGGTTTTTGGGGTTTGTCTTGGTGGGGTTTCTCTCTCTAGGATCATCTGTCTTTGCTTCTGGTGATGGTTGGATTGATGCTCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGGAACAATGGGATATATTCCATGGGTAAGGGTCCCTTGCCAAAAGAGAGGAGGCATCAGATTCACCATCAATGGCCATTCTTACTTCAACCTAATCCTAATCACCAACGTTGGTGGTGCTGGTGATGTTCATGCAGTTTTCATCAAAGGTTCAAGAACCAATTGGCAACCAATGTCAAGAAACTGGGGTCAAAACTGGCAAAGCAACACTAACCTCAATGGACAAAGCCTCTCCTTTAAGGTCACCACTAGCGACGGACACACCATGGTCGCTAATAATGTTGCACCTGCTGGCTGGTCCTTTGGCCAAACCTTCACTGGCCTTCAAATCCCTTAA 453 0.4702 MGFLGFVLVGFLSLGSSVFASGDGWIDAHATFYGGGDASGTMGYIPWVRVPCQKRGGIRFTINGHSYFNLILITNVGGAGDVHAVFIKGSRTNWQPMSRNWGQNWQSNTNLNGQSLSFKVTTSDGHTMVANNVAPAGWSFGQTFTGLQIP* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00518 150 PANTHER EXPANSIN-A15 16 43 IPR002963 GO:0009664
Rops10g00518 150 FunFam Expansin 57 149 - -
Rops10g00518 150 PRINTS Expansin signature 56 68 IPR002963 GO:0009664
Rops10g00518 150 PRINTS Expansin signature 68 89 IPR002963 GO:0009664
Rops10g00518 150 PRINTS Expansin signature 103 124 IPR002963 GO:0009664
Rops10g00518 150 PRINTS Expansin signature 132 148 IPR002963 GO:0009664
Rops10g00518 150 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 67 146 IPR007117 -
Rops10g00518 150 Gene3D - 57 149 IPR036749 -
Rops10g00518 150 SUPERFAMILY PHL pollen allergen 54 146 IPR036749 -
Rops10g00518 150 Pfam Expansin C-terminal domain 58 135 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00518 Rops-Chr10 13564162 13566893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00518 1 43 Expansin Gene Family AT2G03090 58.140 3.72e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00518 - K20628 cit:102606649 197.978