Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00513 ATGGAAAACGTTTCAGTCCTTTGTAAGGAAGAGGATAAGATGGATTTGCCACCTGGGTTTAGGTTTCACCCTACTGATGAAGAGCTTATTAGTCATTACCTTTACAAAAGGGTAACTGACACAAACTTTTCTGCTAGGGCCATTGGAGAGGTTGACCTGAACAAGTCTGAGCCATGGGATTTGCCATGGAAAGCTAAAATGGGAGAAAAAGAGTGGTACTTCTTCTGTGTGAGAGATAGAAAATACCCAACTGGTTTGAGGACTAATAGAGCTACTGAAGCAGGGTACTGGAAGGCAACTGGGAAAGATAAAGATATTTACAGAGGAAAATCTCTGGTTGGAATGAAGAAAACTCTAGTTTTCTACAAAGGAAGGGCACCCAAAGGAGAGAAAACCAATTGGGTCATGCATGAATATAGACTTGAGGGTAGATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTTAGCTAGCAAGAAAACCTATATGTCTGGGATCATGAGGTTGGACTCTTATGGAAATGAATTGGGTTCTTCTATTCTGCCACCACTGACAGATTCATCAACTTCTGTTGACAAGATCAAAGCATTGAGTGTGACTGAAACGGCTTACGTGCCCTGCTTCTCCAATCCAATTGTTGTTCAAAGAAACCAAGGAGGTGTCTTTGATTCCTTCACCAACTTCCCTTTTGGTGTTTCTTCAAATCACTCTGAAACTCTTCCAAAACTCCCACTCTCTTCTGGTTCATTCTATAATATTCAAGGGGTTCAAGCCTCACCAAATTTGCCATTACCTGGTTCTGTTTACACCATCCAGGACCAGATGACCCTTAGAGCCTTACTTGAAAACCATGGATCAAACATGGGGAACAGTTTCAAACCAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAGGTCTGAGTACTGAAGTGAATGCTGAAATCTCTTCTATTATGTCAAATTTTGATTTTGATATGGGTAGAAGACCCTTTGAGAATCATCAGCAGCAGCACCCACCTGCTTCAGCTGCACCACTGGACCTTCCTAGCATGTGGAATTACTAA 1101 0.4214 MENVSVLCKEEDKMDLPPGFRFHPTDEELISHYLYKRVTDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKDIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGRFSVHNLPKTAKNEWVICRVFQKSLASKKTYMSGIMRLDSYGNELGSSILPPLTDSSTSVDKIKALSVTETAYVPCFSNPIVVQRNQGGVFDSFTNFPFGVSSNHSETLPKLPLSSGSFYNIQGVQASPNLPLPGSVYTIQDQMTLRALLENHGSNMGNSFKPEREMVSVSQETGLSTEVNAEISSIMSNFDFDMGRRPFENHQQQHPPASAAPLDLPSMWNY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00513 366 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Rops10g00513 366 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Rops10g00513 366 FunFam NAC domain-containing protein 100-like 25 170 - -
Rops10g00513 366 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Rops10g00513 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 258 - -
Rops10g00513 366 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Rops10g00513 366 MobiDBLite consensus disorder prediction 340 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00513 Rops-Chr10 13456459 13458283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00513 14 366 NAC Transcription Factor Family AT5G07680 57.790 2.15e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g00513 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00513 - - gmx:100170719 568.926