Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00504 ATGGAGCGTGAGGAGTTTAATTTGAACAGAGAAACTAGTGATGTTGGTGGGAATAATAATGGTAAGAGCGGTGATGGTTTCGTTGATAGAAGTAAAGTGCGGATTTTGTTGTGTGATAATGATTCCAAGAGTTCTCAAGAGGTTTTTACACTTCTCTTGAGATGCTCTTATCAGGTTACTTCAGTAAAGTCGGCGAGACAGGTAATTGATGCACTGAATGCAGATGGGCAACATATAGATATCATACTAGCCGAAGTTGACCTTCCAATGAAGAAGGGCATTAAGATGTTGAAGTACATAGCACGGGACAAAGAACTACGCAGAATTCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATGGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTGCGGAGAAGAACATCCTGAATTATGACTTTGATGTGGTAGTATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCCGATGACACAGATGACAAGTCCAAGAGAAGCACTATCCCAGAGACAGGAATATCGGTCCAACAAGAGCAAGAGTCTACTATTGCAATTGTTGCTGCTGTTGAGGAACCTCCAGGTGTTCCACCAGAATATCGGCCTGATGTGATTGGAATTAATGATCACCAAACAGGACATTTTTCATCTGGTCCAAAGAAAAGTGAACTGAGGATTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTGAAGAGAAACTTGGAAGGGATTGTTCATGTTGACAACAATGCTGCTACACATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAATGACCTCCAAATACGTGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAATAGTATACCTGATTCTTTCTCCATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAAGGAAGAAAATTTACATCATGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCCGAGCTTGAAGTATCTGGCATGGCTGCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTGCAGAATCATGCTGGTACAGCTATGATTGCACAGTACAATCATCTTCCACATGGGGGTCCTCATGCAACAGGGATGACATCCTTCCCATATTACCCGATGAGCATATGCTTACAACCTGGTCAGATTCCTACAGCTAATTCATGGCCATCATTTGGAAGTTCAAGTTCATCCGAAGCAAAATTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAACGTTGCTTTGATAAGAAAGTTAGGTATGTCAATCGGAAACAACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTGCTAATGTGGATCTTAATGGACAGCCTGCTTCCATGGACTATGATGAAGAGGATGAAGATGACCAGGGAGCTAGAGATTCCTCTCCTGAGGATGCTTGA 1677 0.424 MEREEFNLNRETSDVGGNNNGKSGDGFVDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTSVKSARQVIDALNADGQHIDIILAEVDLPMKKGIKMLKYIARDKELRRIPVIMMSAQDEVSMVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYDFDVVVSDPSDANTNSTTLFSDDTDDKSKRSTIPETGISVQQEQESTIAIVAAVEEPPGVPPEYRPDVIGINDHQTGHFSSGPKKSELRIGESSAFFTYVKASMLKRNLEGIVHVDNNAATHVRMEVMHQACAQQGVNDLQIRENGEACESQSQDDLPSSNSIPDSFSIERSCTPPASMEVSQQKHYKEENLHHGVMHPRNGTHCSELEVSGMAAQHAYPYYISGVVNHVMMPSSAQMYQKNIQDLQNHAGTAMIAQYNHLPHGGPHATGMTSFPYYPMSICLQPGQIPTANSWPSFGSSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKVRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGQPASMDYDEEDEDDQGARDSSPEDA* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00504 558 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Rops10g00504 558 Pfam CCT motif 481 523 IPR010402 GO:0005515
Rops10g00504 558 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Rops10g00504 558 SUPERFAMILY CheY-like 29 158 IPR011006 -
Rops10g00504 558 SMART REC_2 33 148 IPR001789 GO:0000160
Rops10g00504 558 MobiDBLite consensus disorder prediction 1 24 - -
Rops10g00504 558 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Rops10g00504 558 MobiDBLite consensus disorder prediction 525 558 - -
Rops10g00504 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 249 IPR045279 GO:0009736
Rops10g00504 558 Gene3D - 33 224 - -
Rops10g00504 558 MobiDBLite consensus disorder prediction 537 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00504 Rops-Chr10 13349527 13355471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00504 18 557 Response Regulator Gene Family AT5G61380 49.921 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Rops10g00504 Response_reg 8e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00504 K12127 - gmx:100799728 940.258