Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00500 ATGGCTGTTCAATCCCCTCACTCTTCTCTCCTCCACCACGCCCTTCGTGACGTCGACGACTACGTTTTGGCAAATGAACCAGAAGGTTTGGCATCGGATACACTTCATTACGTTTACGAGCTTGTGAAGAATGGCAATGCAGCATTTCGAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAGCATCAAATCTGGTGATCCAATCATCCTCAGCAATCGAAGCGCAGCTTATATTAGGATGAGCCAATATTTAGTGCACAGAACACCATCATCTTCAGAACATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGCTCTTCTTTTGTTGGAGAAATATGAGAAGGCCCGGGATGTTATTCTTTCGGGACTTCAAATTGATCCGTTTAGCAATTCTCTTCGGGATTCTCTTAAAAATTTGGAAAGAGTGTCATCTAGTTCAACAGGGATGAGTACACAGGGACAACCAGAGCGTAATGATGATTTTGATTGCACTCTTTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCTTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATCGTGGGAACAGATGCCCCTTGTGCAGGACAGTTCTGTTTATAAGTCCTAGATCATGTTCCATCAGTGTGACATTGAAGAACATCATACAGAAGAATTTTCCTGAGGAATATGCTGAAAGGAGGCAAGAGCATGATGGTTTAATCAATGTTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCCCTTCCAGACGGTCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAAGATATTATGCCACCAGAAGGGACACAAGAAAGAGATAATTTACAAGAATTGACATATAATGCGGCTGAAAGTGCTCGATCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACTAGATCAAAGAAGACTTGAGAGACTCCTGAATGTGGAAGCAATGATGCCCTCATTACAAGACCCTGAGCGCTTCAGTTTTTGGCTGGCTACCCTCTCCAATCGGAGGCCTTCCGAAAGATTGGATCTTCTTCGCATTAGAGATACCACGGAGAGGATTAGACGAGGCCTGATATTTCTCAGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1461 0.4264 MAVQSPHSSLLHHALRDVDDYVLANEPEGLASDTLHYVYELVKNGNAAFRENRMEEAINFYSRANSIKSGDPIILSNRSAAYIRMSQYLVHRTPSSSEHRPLSGLDPTTLAELGLKDAEKLVELQSNSVKSYLLKANALLLLEKYEKARDVILSGLQIDPFSNSLRDSLKNLERVSSSSTGMSTQGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRSCSISVTLKNIIQKNFPEEYAERRQEHDGLINVGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTQERDNLQELTYNAAESARSWIARAKEAARLDQRRLERLLNVEAMMPSLQDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00500 486 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Rops10g00500 486 SMART ring_2 196 233 IPR001841 -
Rops10g00500 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 274 IPR013083 -
Rops10g00500 486 ProSiteProfiles Lon N-terminal domain profile. 277 478 IPR003111 -
Rops10g00500 486 CDD RING-HC_LONFs_rpt2 193 237 - -
Rops10g00500 486 Gene3D - 278 380 IPR046336 -
Rops10g00500 486 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
Rops10g00500 486 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Rops10g00500 486 SUPERFAMILY RING/U-box 191 259 - -
Rops10g00500 486 SMART tpr_5 129 162 IPR019734 GO:0005515
Rops10g00500 486 SMART tpr_5 38 71 IPR019734 GO:0005515
Rops10g00500 486 Gene3D Tetratricopeptide repeat domain 31 185 IPR011990 GO:0005515
Rops10g00500 486 Gene3D - 415 478 - -
Rops10g00500 486 SUPERFAMILY TPR-like 38 168 IPR011990 GO:0005515
Rops10g00500 486 PANTHER RING FINGER PROTEIN 127 33 478 - -
Rops10g00500 486 SMART lon_5 279 478 IPR003111 -
Rops10g00500 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 280 476 IPR003111 -
Rops10g00500 486 SUPERFAMILY PUA domain-like 280 476 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00500 Rops-Chr10 13236023 13246743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00500 184 237 C3H Transcription Factor Family AT1G74990 35.088 2.14e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00500 - - lja:Lj0g3v0312049.1 853.973