LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g00497	ATGGGTTGTGTGAGTTCGAAGCAAGCGGTTTCGGTTACTCCGGCGATCGATCACTCCGGCACGTTCGGGAGGAAAACGGCTGATTCGGATAAGAAGAGGACCGAGTCAGGGAGAGCGAGTCATACCGAGTTAGGCGAGTCAGGTAGAGCGAGTTCAAATGGTGGTGGTGGTGGTTGTGAGTCATTAAGTTTCAGGCTAGGTAACCTTCACAAGTACGTTCAAGGTGAACACGTGGCAGCTGGTTGGCCGGCGTGGCTCAGTGCCGTCGCCGGAGAAGCCATTCACGGTTGGGTTCCACTCCGTGCCGATGCCTTTGAAAAACTCGAGAAGATTGGGCAAGGGACTTATAGTAGTGTTTTTCGTGCAAGAGAACTTGAGACGGGTAAGATAGTGGCTTTGAAGAAGGTTCGGTTTGATAATTTTGAACCTGAGAGTGTGAGGTTTATGGCAAGGGAAATAATGATTCTAAGGAGGCTTGATCATCCTAATATTATCAAGCTTGAGGGTTTGATTACATCAAGATTGTCGTGTAGCATTTACCTTGTTTTCGAGTATATGGAGCATGATATTACAGGGCTCTTGTCTTCTTCTGATATCAAATTCAGTGAACCCCAGATTAAGTGCTACATGAAGCAGTTGTTATCTGGTCTTGAGCATTGTCACGTGCTGGGTGTGATGCACCGGGACATTAAAGGATCAAATCTTCTGGTGAATAACGAAGGGATATTGAAGGTGGCGGATTTTGGATTGGCGAATTTCACCAATTATGGATACAGGCAGCCACTCACCAGTCGTGTTGTCACATTGTGGTATCGGCCACCAGAGCTTTTGCTTGGTTCGACGGATTATGGTCCGTCTGTGGATCTCTGGAGTGTTGGCTGTGTGTTTGCAGAGCTACTTGTTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAACAATTACACAAGATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCACATGCAACTCTGTTTAAGCCACAGCAACCATATGATAGCTGCCTCCGAGATTCCTTTAAAGATTTGCCTCCAGCCAGTTTAAATCTGCTCCAAACTCTTCTTTCTGTCGAACCATACAAACGTGGGACTGCCACATCTGCTCTTTCATCCGAGTATTTCAAAACAAAACCTTATGCTTGTGACCCATCAAGCTTGCCGATATACCCACCTAGCAAGGAAATTGATGCAAAACACAGGGAGGAGTCAAGGAAAAAGATTGGTGGACGAGTTCGTGGAGCTGAAACAAGAAAACCATCAAGAAAGCCAATAGGATTCAGTAAACTAGCTCCAGCAGAGGATTTGGCATGTCAAACTCAGACTTCCAAAAAGGTCAATGGTAGGTCTTTTCGCGTCCTCAAGGAAGAGAAGACTAACACAGGTGAGGCACAAAATACATCCAGTGGTAAACCTGAAGATGCTTCCCATATGAAGAATGCATCTCAAGAAGATATTCCCTTTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGCCGTAAAGATGACACTTCAATTCGATCCCATTGTCGAACTATTTCTAGAGGACATATTTTCAATCCGTTAGAACCTGCTGCATTAAATTCAAGGAATAATTTGGACACCATAAACCAGGAAAATAAGGATTTTTGTGGGGCACGCACCAGCTCTAGGGGCCATGACCTACTTGAAAATCCTAAGCTTTCAAATCAGAATCGATGGAGTAAGTTTGATCGCCCTGATTCATTTGATGCTTCTGATGAGTACCACTCACAAGAACTTTCGATGGCATTTTATCATAGAGAAGATTCAGTGTCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGGAGAAAAGGTTGAATTTTCAGGACCCCTACTATCTCAAATGCACACCGTTGATGAGCTCTTAGAAAGGCACGAGCGTCACATCCGGCGAACTGTCCGGAAATCATGGTTTCAGAGAGTTAAGAAGCATGGGAAGTAA	2025	0.4479	MGCVSSKQAVSVTPAIDHSGTFGRKTADSDKKRTESGRASHTELGESGRASSNGGGGGCESLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSSDIKFSEPQIKCYMKQLLSGLEHCHVLGVMHRDIKGSNLLVNNEGILKVADFGLANFTNYGYRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRDSFKDLPPASLNLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRKKIGGRVRGAETRKPSRKPIGFSKLAPAEDLACQTQTSKKVNGRSFRVLKEEKTNTGEAQNTSSGKPEDASHMKNASQEDIPFSGPLQVSTSSGFAWAKSRKDDTSIRSHCRTISRGHIFNPLEPAALNSRNNLDTINQENKDFCGARTSSRGHDLLENPKLSNQNRWSKFDRPDSFDASDEYHSQELSMAFYHREDSVSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRKSWFQRVKKHGK*	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g00497	674	MobiDBLite	consensus disorder prediction	408	437	-	-
	Rops10g00497	674	FunFam	probable serine/threonine-protein kinase At1g54610	188	427	-	-
	Rops10g00497	674	Gene3D	Transferase(Phosphotransferase) domain 1	188	426	-	-
	Rops10g00497	674	MobiDBLite	consensus disorder prediction	15	56	-	-
	Rops10g00497	674	ProSitePatterns	Protein kinases ATP-binding region signature.	111	134	IPR017441	GO:0005524
	Rops10g00497	674	CDD	STKc_CDK9_like	105	389	-	-
	Rops10g00497	674	Pfam	Protein kinase domain	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00497	674	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	225	237	IPR008271	GO:0004672\|GO:0006468
	Rops10g00497	674	ProSiteProfiles	Protein kinase domain profile.	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00497	674	MobiDBLite	consensus disorder prediction	407	440	-	-
	Rops10g00497	674	Gene3D	Phosphorylase Kinase; domain 1	92	187	-	-
	Rops10g00497	674	MobiDBLite	consensus disorder prediction	461	505	-	-
	Rops10g00497	674	SUPERFAMILY	Protein kinase-like (PK-like)	98	396	IPR011009	-
	Rops10g00497	674	FunFam	probable serine/threonine-protein kinase At1g54610	92	187	-	-
	Rops10g00497	674	SMART	serkin_6	105	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g00497	674	MobiDBLite	consensus disorder prediction	474	505	-	-
	Rops10g00497	674	MobiDBLite	consensus disorder prediction	23	42	-	-
	Rops10g00497	674	PANTHER	CELL DIVISION PROTEIN KINASE	103	393	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g00497	Rops-Chr10	13167236	13173175	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g00497	97	448	Core Cell Cycle Gene Families	AT5G10270	48.370	1.97e-113	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Rops10g00497		Pkinase	6.9e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g00497	-		-	gmx:100803328	1173.69