Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00493 ATGAGTTTTTCTCAAAGAAGAAAAACGAATAGCACAAAAGAAGGATCATTAATGTCAGAACAGGAAACAGATTCACGGGGCTTCCTGTTAGTCTGTTTCTTGATCCTTTTCTCAGGTAAATTTGTTGCTGGGAATTCATTGGACACAGACAAACAAGTTCTGTTGAAGTTGAAATCATATTTGGAAAATCAAACAGTTGCAAATAGAGGAGGATATATAAACTGGAACAAGAACAGTTCAAATCCTTGTGAATGGTCAGGAATCTCTTGCAGCCTTTTTAATGGGAAAACATGGAGGGTTGTGACAGTAGATATCTCAGCAAGTGACATAGCAGGTAAGATATTCCACAACTTCTCTCAGCTAACTGAGCTCACACACCTTGACCTTTCTTGGAACACACTCTCTGGGGTGATTCCTGAGGACTTGAGGAAGTGTCAGAAGCTAGTGTATCTCAATCTCTCACATAATATTCTAGAAGGGGAGCTGAATTTGATTGGCTTGACACACTTGCAAACATTGGATTTGTCTGTTAATAGAATTCAAGGGGAACTTGGGTTGAATTTCCCTGCCATTTGTGATAGTTTAGTCACTTTGAATGTTTCAGACAATCACTTTAGTGGAAGGATTGATAGTTGTTTTGATCAATGCCTTAGTTTGCAGTACTTGGATTTGAGCACCAATAATCTAAGTGGGGGCCTTTGGAATGGAATTGCTAGGCTGAGAGAGTTTTCAGTTTCAGAGAATCATCTCAGTGGGATTGTTCCTTCCCAAGCTTTTCCAAGAAATTGTAGCCTTGTAAAACTGGATCTTTCAGTAAATAGATTTATTGGGAAACCCCCTGGGGAGGTTGCTAGGTGCAAGAATTTAAAAATTCTCAATCTTTCTGGTAACAATTTTACTGGAGATATTCCAAAAGAGATTGGTTCAATTTCTGGTCTTGAATCATTGTTCTTGCAGAATAACAGTTTTTCAAGAGATATTCCAGAGACCCTTTTGAACTTGACCAATTTGTTTATCTTGGATTTGAGCAGAAACCAATTTGGTGGGGAGATACAAGAGATTTTTGGGAGATTCAAACAAGTTAAGTTTCTTCTGCTCCATTCAAATTCTTATACTACAGGATTGAATACATCAGGCATTTTTACATTGAAAAATCTTCGACGCTTAGACCTAAGTATCAACAACTTTTCAGGTCCATTACCTGCTGAAATCTCTCAAATGTCTGGTCTCATTTTCTTAACTTTAGCCAATAACCAGTTCACTGGACCTATTCCATCTGGATTGGGGAAATTGACTAGCCTGCAAGCACTTGAACTTTCTTCCAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCTCTCTTATGGTTAATGCTTGCAGATAATTCATTAACAGGAGAAATCCCACCAGAGTTGGGAAACTGCACAAGCTTGTTATGGTTGAACCTTGCAAACAACAAACTCTCTGGAAAATTTCCTTCTGAATTAACTAAGATTGGAAGAAATGCCACAGCCAAATTTGAAGCAAATCATAAAAGTATTGGTCAAGTTATTGCTGGCAATAGTGAATGCTTATCAATGAGGAGATGGATTCCTGCTGATTATCCTCCATTCAGCTTTGTGTATACCATCCTAACAAGGAAGAATTGTAGAGCCCTTTGGGATAGATTGCTCAAAGGATATGGTATTTTCCCCATGTGCGCATATGAGTCCTCTTCTATATCTTCCCACATATCAGGGTATGTTCAGCTAAGTGGGAACCAGCTGAGTGGTGAAATTCCTCCAGAAATCGGGACCATGATGAACTTCAGTATGTTGCATTTGGGGGATAACCAATTCTCTGGGAAATTCCCTCTAGAGATGGTAAATTTGCCACTTGTAGTCTTGAACATGACCAGAAACAAGTTTTCAGGTGAAATTCCTAAGGAAATTGGGAACATGAAGTGTCTGCAGAATTTGGATTTGTCTAGGAACAATTTCTCTGGGACATTTCCCACAAGTTTGGTCAACTTGGATGAGCTTAGTAGGTTCAACATCTCATACAATCCCTTGATATCTGGTGTAGTCCCAGCAGCAGGACACTTGCTTACTTTTGACAAAGACTCATATTTGGGTAACCCCCTCTTAAACCTCCCAAGGTTCTTTGATAACACCCCAGATGAAAGAAATAGGACCTTTCACAAAGACCTGAAAAGATCCACAAAGTGGTCTCTGTTTGTGGCTCTAATACTGGCTATCTTGGTCTTTGGACTTCTTTTTCTAACAATCTGTTTCTTGGTGAAAAGTCCATCTATGAAATCAGAATACCACCTGAGGGATAAAATCCAGGGGCATGATTCAAGTATCTCTGGATCCTCACCATGGTTGTCTGATACTGTTAAGATAATCCACTTGAACAATGCAGTTTTCACACATGCTGACATCTTGGAAGCAACTGGTAACTTCCAAGAGGATAGGATCATAGGAAAGGGTGGCTTTGGAACAGTGTATAGGGGAGTGTTTCCAGATGGTAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAATTGAAGGTGAAAAAGAATTCAGAGCTGAAATGAAGGTTCTAAGTGGTCATGGATTTGGTTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTATATGGTTCACAAAAGATACTGGTTTATGAGTACATAGGAGGTGGAAGCTTAGAGGATCTTGTGACTGATGCAAAAAGGTTAACATGGAAGAGGCGCCTAGAAGTAGCAACTGATGTGGCAAGAGCACTAGTCTATTTACACCATGAATGCTACCCTTCAATTGTACACAGAGATGTTAAGGCTAGTAATGTGTTGCTAGACAAAGATGGGAAGGCCAAAGTCACTGACTTTGGACTTGCTAGAGTTGTTGATGTTGGAGATAGTCATGTGAGCACAATAGTTGCCGGCACAGTGGGGTATGTTGCACCAGAATATGGACAAACATGGCAAGCCACCACAAAAGGTGATGTGTATAGTTTTGGAGTATTGGCTATGGAGCTAGCAACAGGTAGGAGAGCAGTGGATGGAGGTGAAGAGTGTTTGGTGGAATGGGTTAGACGTGTCACAGGTTCTGGAAGACATGGTTTGGTGAATCATTCTGTGCCAGTTTTGTTGATGGGTTCTGGGCTAGTTGGTGGTGTAAAAGAGATGGGTGGGTTGCTCCATGTTGGGTTGAAGTGCACAAATGACTCACCACAAGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTGATTAAGATATACAATCCCATTGGAGACTCAAATTATGGACACCTTGTTTAG 3327 0.4073 MSFSQRRKTNSTKEGSLMSEQETDSRGFLLVCFLILFSGKFVAGNSLDTDKQVLLKLKSYLENQTVANRGGYINWNKNSSNPCEWSGISCSLFNGKTWRVVTVDISASDIAGKIFHNFSQLTELTHLDLSWNTLSGVIPEDLRKCQKLVYLNLSHNILEGELNLIGLTHLQTLDLSVNRIQGELGLNFPAICDSLVTLNVSDNHFSGRIDSCFDQCLSLQYLDLSTNNLSGGLWNGIARLREFSVSENHLSGIVPSQAFPRNCSLVKLDLSVNRFIGKPPGEVARCKNLKILNLSGNNFTGDIPKEIGSISGLESLFLQNNSFSRDIPETLLNLTNLFILDLSRNQFGGEIQEIFGRFKQVKFLLLHSNSYTTGLNTSGIFTLKNLRRLDLSINNFSGPLPAEISQMSGLIFLTLANNQFTGPIPSGLGKLTSLQALELSSNSFSGPIPPSLGNLSSLLWLMLADNSLTGEIPPELGNCTSLLWLNLANNKLSGKFPSELTKIGRNATAKFEANHKSIGQVIAGNSECLSMRRWIPADYPPFSFVYTILTRKNCRALWDRLLKGYGIFPMCAYESSSISSHISGYVQLSGNQLSGEIPPEIGTMMNFSMLHLGDNQFSGKFPLEMVNLPLVVLNMTRNKFSGEIPKEIGNMKCLQNLDLSRNNFSGTFPTSLVNLDELSRFNISYNPLISGVVPAAGHLLTFDKDSYLGNPLLNLPRFFDNTPDERNRTFHKDLKRSTKWSLFVALILAILVFGLLFLTICFLVKSPSMKSEYHLRDKIQGHDSSISGSSPWLSDTVKIIHLNNAVFTHADILEATGNFQEDRIIGKGGFGTVYRGVFPDGREVAVKKLQREGIEGEKEFRAEMKVLSGHGFGWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEDLVTDAKRLTWKRRLEVATDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWVRRVTGSGRHGLVNHSVPVLLMGSGLVGGVKEMGGLLHVGLKCTNDSPQARPNMKEVLAMLIKIYNPIGDSNYGHLV* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00493 1108 FunFam Putative LRR receptor-like serine/threonine-protein kinase 358 519 - -
Rops10g00493 1108 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 899 1099 - -
Rops10g00493 1108 ProSitePatterns Protein kinases ATP-binding region signature. 825 848 IPR017441 GO:0005524
Rops10g00493 1108 Gene3D Ribonuclease Inhibitor 188 233 IPR032675 -
Rops10g00493 1108 Pfam Leucine Rich repeat 168 183 IPR001611 GO:0005515
Rops10g00493 1108 Pfam Leucine Rich repeat 286 302 IPR001611 GO:0005515
Rops10g00493 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
Rops10g00493 1108 FunFam Leucine-rich repeat receptor protein kinase MSP1 782 898 - -
Rops10g00493 1108 Gene3D Ribonuclease Inhibitor 234 374 IPR032675 -
Rops10g00493 1108 Gene3D Ribonuclease Inhibitor 375 530 IPR032675 -
Rops10g00493 1108 SUPERFAMILY L domain-like 239 698 - -
Rops10g00493 1108 SMART LRR_typ_2 167 187 IPR003591 -
Rops10g00493 1108 SMART LRR_typ_2 383 407 IPR003591 -
Rops10g00493 1108 SMART LRR_typ_2 121 144 IPR003591 -
Rops10g00493 1108 SMART LRR_typ_2 310 334 IPR003591 -
Rops10g00493 1108 SMART LRR_typ_2 431 454 IPR003591 -
Rops10g00493 1108 SMART LRR_typ_2 455 479 IPR003591 -
Rops10g00493 1108 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 351 - -
Rops10g00493 1108 CDD STKc_IRAK 825 1095 - -
Rops10g00493 1108 PANTHER LEUCINE RICH REPEAT KINASE 2 381 1095 - -
Rops10g00493 1108 Gene3D Phosphorylase Kinase; domain 1 789 898 - -
Rops10g00493 1108 Gene3D Ribonuclease Inhibitor 571 729 IPR032675 -
Rops10g00493 1108 ProSiteProfiles Protein kinase domain profile. 819 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00493 1108 SMART serkin_6 819 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00493 1108 Gene3D Transferase(Phosphotransferase) domain 1 900 1102 - -
Rops10g00493 1108 SUPERFAMILY Protein kinase-like (PK-like) 801 1093 IPR011009 -
Rops10g00493 1108 Pfam Leucine rich repeat 116 156 IPR001611 GO:0005515
Rops10g00493 1108 Gene3D Ribonuclease Inhibitor 46 187 IPR032675 -
Rops10g00493 1108 Pfam Leucine rich repeat N-terminal domain 48 91 IPR013210 -
Rops10g00493 1108 Pfam Protein kinase domain 819 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00493 1108 SUPERFAMILY L domain-like 78 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00493 Rops-Chr10 13034187 13038085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00493 28 654 Receptor kinase-like Gene Family AT1G55610 28.725 5.47e-45 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Rops10g00493 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00493 - - gmx:100813425 1710.66