Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00489 ATGTACTTGAACTTCAGGTCTATTCATGATGAGGTTGCAGAGCTGACATGGCAAAATGGCCAACCATCCATGCATGGGCTTAGTGGGCTTCATCATGAAAGGCCCACATTAAGTAAGGCCCATGATACATTAGAATCTATAGTTCAACAAGCCACATTGCAACATCAAAAATCAAAGTACATCATGGAAGACCATCATGCCCCTATTAGTGTAAGTTCCATGGCTGCATCCTCTTGTGAGTTACATAAGGTTCCAACGTTGACAAGGAAGAGGGCATGGTCAAATTCAAATTACCATGAGAGAAATTTTAGCACCAACAACACTAAGATGTTAGAAGAATGTGGCATACCTAAAGGTTGTGCTAGTGCTGGTGCCACTTTTTGTAGGGACAATGATACAACTATGGTCACATGGGCTTCTCTTGAATCTGGTAGAATCTTAGAGAATAAAACTCTTGAGGAGGAACTTTCTGCTTGTCATTGTGGATCGGAAATGCGAGATGACCAAGATGACAGAGACAGCAAAGCAGAAACAGAAACAGGACAAACCAACTCAAAAAGACGAAATCGAACTGCTGCCATCCACAACCAATCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTACCTAATGCATGTAAGACTGATAAAGCTTCAATGTTAGATGAGGTGATCAACTACTTAAAACAGCTTCAAGCACAGATCCAAATGATGAACATGACAAGCATGCCCCAGATGATGGTTCCTTTAGCTATGCAACAACAGCTTCAGATGTCAATGCTAGCTAGAATGAGTGCTGGGCTTGGCATGGGAATGGTTAACATAAACAACATGGCTGCACACACAGCACCTCCTCAATCATTCCCTCAACTCATTCATCCAACAACAACAACAATTGGAGCTCCTATGTTTGTTCCCTCATCCTTTATGATGCCTTCTTTGATTCAAGCACGTGGCCTCGCACCTCCAAAGCCTGAGCCTGCATCTTCATGCACCAATGCTTCAATTCCTTGGCCTGATCCATATAGCACTAGTTTGACACAAGTATGTGATCTAAATGCATGTTCTGGAACTGATCAATCACTTTGA 1113 0.4232 MYLNFRSIHDEVAELTWQNGQPSMHGLSGLHHERPTLSKAHDTLESIVQQATLQHQKSKYIMEDHHAPISVSSMAASSCELHKVPTLTRKRAWSNSNYHERNFSTNNTKMLEECGIPKGCASAGATFCRDNDTTMVTWASLESGRILENKTLEEELSACHCGSEMRDDQDDRDSKAETETGQTNSKRRNRTAAIHNQSERKRRDRINQKMKALQRLVPNACKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMSAGLGMGMVNINNMAAHTAPPQSFPQLIHPTTTTIGAPMFVPSSFMMPSLIQARGLAPPKPEPASSCTNASIPWPDPYSTSLTQVCDLNACSGTDQSL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00489 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Rops10g00489 370 Pfam Helix-loop-helix DNA-binding domain 195 240 IPR011598 GO:0046983
Rops10g00489 370 Gene3D - 184 250 IPR036638 GO:0046983
Rops10g00489 370 Coils Coil 196 216 - -
Rops10g00489 370 MobiDBLite consensus disorder prediction 162 204 - -
Rops10g00489 370 MobiDBLite consensus disorder prediction 162 184 - -
Rops10g00489 370 CDD bHLH_AtPIF_like 190 252 IPR047265 -
Rops10g00489 370 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 356 IPR031066 -
Rops10g00489 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 253 IPR036638 GO:0046983
Rops10g00489 370 SMART finulus 196 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00489 Rops-Chr10 12962948 12966255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00489 11 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 37.091 1.28e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g00489 HLH 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00489 - - gmx:102667566 391.349