Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00485 ATGGAACTCACAGAAGAACAGAGAAAACAAGTAGAAGCAAACCGTGCAGCAGCCATAGCAAAACGAAAGGCCTTCTTAGAATCCAAGAGTTCCTCCCTTCAACCACCTCAACATGAAAATGGACCCTGGCACCTTTTCAAATGCCAAAAGTTCCCCCAACAACAACCACCTCAGAAGTTCCTCGCCAGACTCGAAATTTGTTCCCCCGATTCCTTCTCAATCACCCCTCTCCCTCTCCCCAATTCCCCTTTCCCCGAACTAAACATCTGCTTCGACATTCTCAATTCCATTCTCTCCCATGTTGTGCCTTCCCATTTCACGCAGACGAGTGGTGGTGGGAGGGCATGTGTGTTCAAGCTGGCTGACTACGGCGTCGTTTTGAAGCGGTTGAAGGCTGCTTCTGATATCCACGTGGAGGAGATTCCTTGGGGGACGTTCAATGTTATGGAGAGGCTCTCGCATTCGTATGCGGCGGGGCGGTGGATGCCGTTGAGGCCGGAGCATTTGGGTGATGATGAGGTTGATTGCTTGATTGAGAAGCTTCCGAGGACACTGCTTGATGCCTTGATGCGTTTCCAACTTGAGGGGTTGAGGTTTGCCCTCAGAAGGGGTGGCCAGTGCCTCATCGCAGATGACATGGGCCTCGGGAAAACACTTCAGGCTATTGCTATTGCGGGATGTTTCTTGGATGAAGGGTCTGTACTTGTTGTTTGCCCCGCTGTCTTGCGGTTTACATGGGCGGAAGAATTGGAGCGTTGGCTTCCTTACTGCTTGCCTGCTGATATCCATCTGGTTTTTGGCCATCAAGACAATCCTGCATATTTAACCAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCCATCGTCTTAGGAAGAGCATGCTTGAGCGTGAGTGGGCTCTTATGATTGTTGATGAATCTCATCATGTGCGATGCACAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCGAAAGTCAGGCGTATAATTCTGCTATCAGGGACACCTTCTTTGTCAAGACCGTATGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGAAGACTAAATATGAGTTTGCAAAAACTTATTGTGATTTCAAATATATTAAGGGCATCCAAGGAAAATATTTTGCGGATTATTCAAAAGGAATTCGCTTGGAGGAGTTGAACGTGTTGCTAAAGCAAACTGTTATGATAAGGCGGCTGAAGGAACATGTGATGCTACAGTTACCTCCAAAACGCCGGCAAATTATACGACTGTTGTTGAAGAGATCAGATATAGTTGCTGCAAAATCGGCAGTTGGGGTATCGAAGATTCATGCCTCTGAAAATGCAAGTGAAGAAGACATGGCTTTGGAAAATTTGGATGAACCCGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGAATAAATTTTGTGCGAATAGATGGAAATACTCTTGCTAGAGATAGACAATCTGCAGTAGTCTCATTTCGATCATCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAGCTACCTCAGTGCCCAACTGTGATGCTTCAGGCCGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCTGTTAATGTATACATATTCTGTGCAAAGGATACCTTAGATGAATCACATTGGAAAAATTTAAACAAAAGTTTGCACCGTGTTTCATGTACAACAGATGGCAAATATGATGCAATAAAAGAGATAGAGGTTGAGGGTATTTCTTATTTAGACGCATCTTTGAAAACTGACAGTTGTAAACAGCAATCTGCTTGCAAAGATGCATCAAGTGAAACACATTTGGATAAGCAACCTTCCACAGTAAATTCTAATGAATCAGAAGCAAATCAAGATGATAAATCTAATGAGGGGACTTCTTCTGTAAATAGCACAATTCAGGGTGTTAATACTATGGCTGATAATGTTTCCTGCCTAGATTCAGGCAAGGATTCGGTTTTGGATGGAAATCTTGATGTAGTAGATGTTTTTGGTGCTGAGGAGAGATGTTCTGAAAAGAGTTTCAAAGACAAAGACAAAGATAAGGAATCAACTTCAACAACTGATGCAGATGACAATCAGCCTGTTCATCCTGTCGAAGATGATGGACATTGCTCTAATCAAGTTGGTTCTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACAGACACAAGACCACAACCACTTTATGAAAATTTCCGACCGGAAGAACTTGAGTTACTAAGTACTGCTGCTGCTGATGAGAAACAGAATATAGAGTCTGTATCTGTCAAGGATAACCCTGCTTATAGGCATGCTCTTCTCGATTTTGCAAATGAGTGGAAAAATTTGAGGTCAATTGAACGCAAGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTGTGCTATTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAGACGACGCATGACACCTTTAACGGAGATTAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTTTATCTGCGAAGTGGCCTTGGTAAGAAGGAAAAAGAGTACACTCAAGGCTGGAGTCTGGACGATGAGCCACTCTGTAAGCTTTGTCAAAAACAGTGCATGGGTAACAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTCTCTGCTATGAAGAGTATCGCATGAGAACTAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAACAAGGTGTGTGCACAAATTGCCGATTGGACTGTCATAAGCTTGTTGAGCATATCAGACCTTTGTCATTGGAAAGGCGACAAGAATACATTGAGAAAGTAGCACCAAAAATTGCAAAGCGGAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATTGTTCCGGTATATCAAGGCGGAGGTGAATGCCAACTGGAGAATATGAGAACTCTTTGTGTGGCCTGCCATTATGATGTTACTACTGCACAGTGTGCTGAGCGACGCATAGCAAAAGCAAATGCCAGGAAACAACTAAAAGTGTTAATGAATACCATTAAAAATGGTATGAAGAGTGCCGCTGGCGCTAATGATAAGGACCATGGGCTTCTGGAGGTACAAGGGAGTGAGATTGAGGATGAGCTTTTAGTCAAGGTTCCTGGAAGTGCCTATTCTCTAGCTGACAGCTAA 3468 0.4308 MELTEEQRKQVEANRAAAIAKRKAFLESKSSSLQPPQHENGPWHLFKCQKFPQQQPPQKFLARLEICSPDSFSITPLPLPNSPFPELNICFDILNSILSHVVPSHFTQTSGGGRACVFKLADYGVVLKRLKAASDIHVEEIPWGTFNVMERLSHSYAAGRWMPLRPEHLGDDEVDCLIEKLPRTLLDALMRFQLEGLRFALRRGGQCLIADDMGLGKTLQAIAIAGCFLDEGSVLVVCPAVLRFTWAEELERWLPYCLPADIHLVFGHQDNPAYLTRCPRVVVISYTMLHRLRKSMLEREWALMIVDESHHVRCTKKTSEPGEIKAVLDVASKVRRIILLSGTPSLSRPYDIFHQINMLWPGLLGKTKYEFAKTYCDFKYIKGIQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLLKRSDIVAAKSAVGVSKIHASENASEEDMALENLDEPDGKLSYQELGIAKLSGFREWLSLHPLIAGSENASKMIIFAHHHKVLDGVQEFICEKGINFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTDGKYDAIKEIEVEGISYLDASLKTDSCKQQSACKDASSETHLDKQPSTVNSNESEANQDDKSNEGTSSVNSTIQGVNTMADNVSCLDSGKDSVLDGNLDVVDVFGAEERCSEKSFKDKDKDKESTSTTDADDNQPVHPVEDDGHCSNQVGSLRFEVSPYTGRIHLYTCILGTDTRPQPLYENFRPEELELLSTAAADEKQNIESVSVKDNPAYRHALLDFANEWKNLRSIERKKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSRRRMTPLTEISHPLPSDAVWRKVYLRSGLGKKEKEYTQGWSLDDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLLCYEEYRMRTSNRFLRQELFQIEQGVCTNCRLDCHKLVEHIRPLSLERRQEYIEKVAPKIAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECQLENMRTLCVACHYDVTTAQCAERRIAKANARKQLKVLMNTIKNGMKSAAGANDKDHGLLEVQGSEIEDELLVKVPGSAYSLADS* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00485 1155 Gene3D - 171 409 IPR038718 -
Rops10g00485 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 652 IPR027417 -
Rops10g00485 1155 FunFam SNF2 DNA repair protein, putative 163 412 - -
Rops10g00485 1155 Coils Coil 1 21 - -
Rops10g00485 1155 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 646 IPR001650 -
Rops10g00485 1155 Pfam Helicase conserved C-terminal domain 498 600 IPR001650 -
Rops10g00485 1155 MobiDBLite consensus disorder prediction 747 774 - -
Rops10g00485 1155 MobiDBLite consensus disorder prediction 670 706 - -
Rops10g00485 1155 SMART ultradead3 185 381 IPR014001 -
Rops10g00485 1155 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1104 - -
Rops10g00485 1155 Gene3D - 978 1111 - -
Rops10g00485 1155 Pfam HNH endonuclease 1053 1084 IPR002711 GO:0003676|GO:0004519|GO:0008270
Rops10g00485 1155 CDD HNHc 1047 1087 IPR003615 -
Rops10g00485 1155 SMART helicmild6 517 600 IPR001650 -
Rops10g00485 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 413 IPR027417 -
Rops10g00485 1155 MobiDBLite consensus disorder prediction 747 778 - -
Rops10g00485 1155 Pfam SNF2-related domain 206 441 IPR000330 GO:0005524|GO:0140658
Rops10g00485 1155 CDD SF2_C_SNF 482 611 - -
Rops10g00485 1155 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 362 IPR014001 -
Rops10g00485 1155 Gene3D - 489 713 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00485 Rops-Chr10 12888219 12916408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00485 505 618 RAD5 or RAD16-like Gene Family AT1G11100 38.596 1.69e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops10g00485 SNF2_N 7.3e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00485 K25861 - gmx:100788690 1825.06