Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00482 ATGCATGACATCAAAATGTACCCACAACAGCAACAGCACCACCATGTTCCCTTCACCAACTTGCAGCAGCAACCATACTATTCTGCTGCAAACCCATTCTTGTTTTCTTTGCCTCTCAATTCAGATTATGCTCTTCATCCTCCTGGCATCGACCCCCATGCAAATTCAACCCCTTCTTCTGCTGTTTACGGTCCCCAAACAACAAATTATCAGAATTGGATCGTCAAACAAGCTGAACCCATCAGATATGATCATGTTGTTGGTTCGTCACATGAGACTTCAGCAGCTTCCGCAATTGTGCCTTTGACGTGGAATGGCACATGGTCACATCAATTTTTCACTAATGATACTGCAGTAATGTTGCCAAACAAAACCAAAGTCTCCATACCAATGAGATGTGAAATATGTAAAATTGATTGCAATAGCAAAGATGTTTATGAAAAGCACATATTGGGAAAGAAACACAAGAGGAATTTGCAGGTACAGATTAATCCTTCTGTCCCATTATTACCAGGATCCTCTCATGCAAATGTACAAAGTCACCCAAGTAGTATCCAAGGACAAGTGTTAATTGGTGCTGTAGACAATGAGTTAGAGTCCAAGAAATGGAAGGTTTTGAATGGTGGTGCACCCATTGATTCCGTAAAGGTTTGCACAGCATGCAACATTGTTTGCAATAGTCAAGATGTGTATAACAAACATCTAGCTGGGAAAAAGCATGCTGCTCAGGTTGGCTTGATGTCTAATAATGTGATTGGTCCACATATTGCTGAATTTAAACGCCATGGTATTGGTCCTTGGAAAAAAGCTCCAAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAGCCTGTAAGATCAATTGTAATAGCAGAGATATGTATATTGTACACTTATCCGGGAAGAAACACCTGAAGAACTTGGAGAAACTGTCAAAACCGAAAATCGATGCCGGTGCTGCTGCCACCACTGCAAATGCTCCGATAATCGGGCCACAGGAAAAGCCAGGTACTGATGAACCAAAACCTAAGAAGGAATCAGAAATGGATATTGAGACAAAGAAACGTAGAGTCGTAGAAGGAGGGGCTGCAGAAGCTGATGTTAAATTGTGCACTCTATGCAATGTGGTGTGCAATAGCCAGACAGTTTTTGATGCTCACCTTGCTGGCCATAAACATGCTGCTATGGTGAAGAAGCAGGCAGTGTCAAGCACTGGTTGA 1221 0.421 MHDIKMYPQQQQHHHVPFTNLQQQPYYSAANPFLFSLPLNSDYALHPPGIDPHANSTPSSAVYGPQTTNYQNWIVKQAEPIRYDHVVGSSHETSAASAIVPLTWNGTWSHQFFTNDTAVMLPNKTKVSIPMRCEICKIDCNSKDVYEKHILGKKHKRNLQVQINPSVPLLPGSSHANVQSHPSSIQGQVLIGAVDNELESKKWKVLNGGAPIDSVKVCTACNIVCNSQDVYNKHLAGKKHAAQVGLMSNNVIGPHIAEFKRHGIGPWKKAPKKIKVAQSAWCEACKINCNSRDMYIVHLSGKKHLKNLEKLSKPKIDAGAAATTANAPIIGPQEKPGTDEPKPKKESEMDIETKKRRVVEGGAAEADVKLCTLCNVVCNSQTVFDAHLAGHKHAAMVKKQAVSSTG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00482 406 MobiDBLite consensus disorder prediction 337 356 - -
Rops10g00482 406 PANTHER ZINC FINGER PROTEIN 385B-LIKE 270 402 - -
Rops10g00482 406 Gene3D Classic Zinc Finger 268 314 - -
Rops10g00482 406 SUPERFAMILY beta-beta-alpha zinc fingers 366 399 IPR036236 -
Rops10g00482 406 Pfam Zinc-finger of C2H2 type 281 304 - -
Rops10g00482 406 Pfam Zinc-finger of C2H2 type 133 155 - -
Rops10g00482 406 Pfam Zinc-finger of C2H2 type 371 393 - -
Rops10g00482 406 Pfam Zinc-finger of C2H2 type 217 240 - -
Rops10g00482 406 SUPERFAMILY beta-beta-alpha zinc fingers 278 311 IPR036236 -
Rops10g00482 406 SMART c2h2final6 216 240 IPR013087 -
Rops10g00482 406 SMART c2h2final6 369 391 IPR013087 -
Rops10g00482 406 SMART c2h2final6 280 304 IPR013087 -
Rops10g00482 406 SMART c2h2final6 131 155 IPR013087 -
Rops10g00482 406 SMART ZnF_U1_5 128 162 IPR003604 GO:0003676|GO:0008270
Rops10g00482 406 SMART ZnF_U1_5 277 311 IPR003604 GO:0003676|GO:0008270
Rops10g00482 406 SMART ZnF_U1_5 213 247 IPR003604 GO:0003676|GO:0008270
Rops10g00482 406 SMART ZnF_U1_5 366 400 IPR003604 GO:0003676|GO:0008270
Rops10g00482 406 SUPERFAMILY beta-beta-alpha zinc fingers 112 161 IPR036236 -
Rops10g00482 406 Gene3D Classic Zinc Finger 197 246 - -
Rops10g00482 406 Gene3D Classic Zinc Finger 116 162 - -
Rops10g00482 406 Gene3D Classic Zinc Finger 343 401 - -
Rops10g00482 406 MobiDBLite consensus disorder prediction 327 356 - -
Rops10g00482 406 SUPERFAMILY beta-beta-alpha zinc fingers 212 244 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00482 Rops-Chr10 12855269 12867252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00482 207 397 C2H2 Transcription Factor Family AT5G61190 29.843 5.22e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00482 - - aprc:113848135 581.637