Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00481 ATGGAAGAAGATCAAGAACTCAAACACGTGTGCAAGTTTTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGGGGGTCACATGAGGTCTCATGTGACAAATGTTTCATCTGAGACAGAGAAGTTTGCAACAACAAAGAAGCTTTCATCTAACAACAACAACAACAATGGTGGTGGAGACGTAGGAAATGGTTCTGAAGCAGGAACTAGTGCTGGTTATGGTCTAAGAGAGAATCCCAAGAAGACTTGGAGGCTCACTGATACAAGTGAAGACACTTTGGTGGTGTTGGATAAGTTTTGCAAAGAGTGTGGTAAAGGGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGTCATTCTGAGAAAGAAAGAGTGTCCAATAACAGCTTGGAAGATCAAGATTCATGGACTAACAATAACAATGCTAGCCAGAAGTTAGTCATGGATAGCCAATCTGACACTGAAACCACTGCTCCAAATAGAAGGAGAAGATCCAAGAGAAGAAGAACAAGGTACATCGCCCCAGTTTCTTCTTCTATGTCTTTTGCTACCAATCCTTGCTCTTCTGTTTCTGAGGTTGAACAGGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATATGAGTCCTTGGGGTGGTGTCAATTCTGTTGCTGAGTCCTCTGACAATAACTCATTGCATTTGGAAGCTCCATCTTCTGTTCCAACCAATCTTGTTTCTAAGATTGAGGGTAAGAGGCTCATCTCCAGTGGTTCTGAAATGGGAAAAGTGGCCAAACCAAGGGACAAGAAGTGGGAGTTTGGGAATTCAGTTCCTTCAAATATCAACTCCAAAGGGAAAAATTCAGAATTTTTGGCTAATGAGAGTCCTGGAAATGGATTCAAGATGAACAAAACAAGAGTTCCCATTAATGGGTTCATCAAGAATGGAAGGAATGTGAAGTCTGAGCTTGATTCTGAGTCTGCATTTGAGGTCAATGGAACAGAATTAGCTTTTTCAAAGTCAGCTACTACAAATAATAAGTACACTTCAATCAAGGCAAAGTTTTTGGATTCTGAACCAAAGTCAACACATTCTTTGAAGAATTGGGCAAACAAGGCTTCAGAAGGAGAATTCAGCAAGAATTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGTCATAGAGCAAGTCATAAGAAGATCAAAGGGTGCTTTGCTTCAAGAAATGAGAGCAGTGAGAACAGCACTGAATTGGAAGCAGACATCTCCCCTGACCCAACAACAACAGAAAGTAAGCTCATGAAGAACACTGACAACAATGAATGTATTGAAGAACATGAACTTGGTACTGGTTTTGATGATGATGATGATGAAGCAGACACCACTAGAGAATCCAAGAAGAGCAAAGTGCATGAGTGCCCAATTTGTCTCAAGGTTTTTCCATCTGGGCAAGCCTTGGGTGGCCACAAGAGATCTCATATAGCTAGTGAATCTGAGAGCAGTAAAAACTGTCGAAGTCAAACAGTAGTGCTTCAAGAAGCAGTTCCAGAAATAAGGGACTTCCTTGATCTTAACCTTCCAGCTGCTACAGAAGAAGAAAGCAATAGCAATAGCAATGCTGAGCCTTACAGACCTTGGTGGGTAGTAGGAAGCAACCACAAGCAAGAGGCACTGGTAGGCCTCATGTCTAACTGA 1725 0.4203 MEEDQELKHVCKFCSKSFPCGRSLGGHMRSHVTNVSSETEKFATTKKLSSNNNNNNGGGDVGNGSEAGTSAGYGLRENPKKTWRLTDTSEDTLVVLDKFCKECGKGFHSWKALFGHMKCHSEKERVSNNSLEDQDSWTNNNNASQKLVMDSQSDTETTAPNRRRRSKRRRTRYIAPVSSSMSFATNPCSSVSEVEQEQEEVAMSLMMLSRDMSPWGGVNSVAESSDNNSLHLEAPSSVPTNLVSKIEGKRLISSGSEMGKVAKPRDKKWEFGNSVPSNINSKGKNSEFLANESPGNGFKMNKTRVPINGFIKNGRNVKSELDSESAFEVNGTELAFSKSATTNNKYTSIKAKFLDSEPKSTHSLKNWANKASEGEFSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEADISPDPTTTESKLMKNTDNNECIEEHELGTGFDDDDDEADTTRESKKSKVHECPICLKVFPSGQALGGHKRSHIASESESSKNCRSQTVVLQEAVPEIRDFLDLNLPAATEEESNSNSNAEPYRPWWVVGSNHKQEALVGLMSN* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00481 574 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 557 - -
Rops10g00481 574 MobiDBLite consensus disorder prediction 282 298 - -
Rops10g00481 574 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Rops10g00481 574 MobiDBLite consensus disorder prediction 37 63 - -
Rops10g00481 574 SUPERFAMILY beta-beta-alpha zinc fingers 99 408 IPR036236 -
Rops10g00481 574 Gene3D Classic Zinc Finger 1 65 - -
Rops10g00481 574 Pfam C2H2-type zinc finger 100 122 - -
Rops10g00481 574 Pfam C2H2-type zinc finger 9 31 - -
Rops10g00481 574 Pfam C2H2-type zinc finger 480 503 - -
Rops10g00481 574 Pfam C2H2-type zinc finger 386 410 - -
Rops10g00481 574 MobiDBLite consensus disorder prediction 418 446 - -
Rops10g00481 574 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Rops10g00481 574 MobiDBLite consensus disorder prediction 282 301 - -
Rops10g00481 574 SMART c2h2final6 9 31 IPR013087 -
Rops10g00481 574 SMART c2h2final6 386 408 IPR013087 -
Rops10g00481 574 SMART c2h2final6 481 503 IPR013087 -
Rops10g00481 574 SMART c2h2final6 98 120 IPR013087 -
Rops10g00481 574 MobiDBLite consensus disorder prediction 131 156 - -
Rops10g00481 574 MobiDBLite consensus disorder prediction 37 77 - -
Rops10g00481 574 ProSitePatterns Zinc finger C2H2 type domain signature. 483 503 IPR013087 -
Rops10g00481 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 413 IPR013087 -
Rops10g00481 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Rops10g00481 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Rops10g00481 574 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Rops10g00481 574 MobiDBLite consensus disorder prediction 127 172 - -
Rops10g00481 574 ProSiteProfiles Zinc finger C2H2 type domain profile. 481 508 IPR013087 -
Rops10g00481 574 MobiDBLite consensus disorder prediction 418 476 - -
Rops10g00481 574 ProSitePatterns Zinc finger C2H2 type domain signature. 388 408 IPR013087 -
Rops10g00481 574 Gene3D Classic Zinc Finger 383 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00481 Rops-Chr10 12839746 12841956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00481 378 546 C2H2 Transcription Factor Family AT2G45120 40.828 3.32e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops10g00481 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00481 - - aprc:113852386 765.377