Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00456 ATGCCTTTACCAAGAAGGGATCAAGAAAGAAGTCCTGGTCGAACGCTAAGTGAAGATGAAAGAATAACTCTAAGAAACTTTTCCATGCGATGGAACACTCATACCAATGTTTATGAATATTGTCCCATTACTTGGGTTCGTTATGTTTCCCTATATTATAGATTTAGGGAGAACCACCCGAGCTCTAATGTTTATGCCTTTATTGATAGGATTATAAGCTCCCAAAATGTTTCCTCCTTTCGTGACGCTTATGTTATAGACAATAGGGACCAGAATTTAGGGGCAGCGAACTCTCAAACTGGATACTCTTTCGAAAATCTTGAAAGTTTCAGAATTGAAGGAACACCAGGGACTGAGTCTGAGTGCTCCATATGTCTTCGGAAGCTTTCAATTGGGTCGTTAGCAATTCGTTTGCCCAATCCGTGTTCTCATGTCTATCATCAAAATTGCATCATTAAGTGGCTCAACAAGTCCAAAACATGTCCTTTGTGTCGAAGGTCCATCTGA 507 0.4024 MPLPRRDQERSPGRTLSEDERITLRNFSMRWNTHTNVYEYCPITWVRYVSLYYRFRENHPSSNVYAFIDRIISSQNVSSFRDAYVIDNRDQNLGAANSQTGYSFENLESFRIEGTPGTESECSICLRKLSIGSLAIRLPNPCSHVYHQNCIIKWLNKSKTCPLCRRSI* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00456 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 168 IPR013083 -
Rops10g00456 168 SMART ringv_2 121 165 IPR011016 GO:0008270
Rops10g00456 168 ProSiteProfiles Zinc finger RING-type profile. 122 165 IPR001841 -
Rops10g00456 168 SUPERFAMILY RING/U-box 121 168 - -
Rops10g00456 168 Pfam Ring finger domain 121 165 IPR001841 -
Rops10g00456 168 SMART ring_2 122 164 IPR001841 -
Rops10g00456 168 PANTHER SI:CH211-59O9.10 32 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00456 Rops-Chr10 12278167 12278673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00456 100 168 C3H Transcription Factor Family AT5G66070 39.130 9.25e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00456 - - cam:101499142 92.0485