Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00455 ATGTCGTTACCAAGAAGGGTGGCAAGGGATCAAGGAGAACAACCTGGTCGAACACTAACTGAAGATGAAAGAATAACTCTAAGAAACTTTTCCATGAGATGGAACGCTCGTACCAATGTCTATGAATATTGTCCCTTTACTTGTGTTCATTACGTGACCATGTATTATAGGTTTAGGGAGAACCATCCAAACTCGAATGTTTATGTCTTTCTTGACAACATTATAAGCTCTGGGAACGTTATTAGGCACAACAGGGAAAAGAATCCTAAAACTCAATACTCTTTCAAGAATCTTGAAAGTTTCAAAATTGAAGGAGCACCCGAGTTTGAGTGTGAGTGCTCCATATGTCTTGGGGAGCTTTCAATTGGGTCACTAGCAATTCGTTTACCCAATCCGTGTTCTCATGTTTATCATCAAGATTGCATCATTAAGTGGCTCAACATGTCTAATACATGCCCTTTGTGTCGTAGGCGTATCTGA 480 0.4 MSLPRRVARDQGEQPGRTLTEDERITLRNFSMRWNARTNVYEYCPFTCVHYVTMYYRFRENHPNSNVYVFLDNIISSGNVIRHNREKNPKTQYSFKNLESFKIEGAPEFECECSICLGELSIGSLAIRLPNPCSHVYHQDCIIKWLNMSNTCPLCRRRI* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00455 159 ProSiteProfiles Zinc finger RING-type profile. 113 156 IPR001841 -
Rops10g00455 159 SUPERFAMILY RING/U-box 112 159 - -
Rops10g00455 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 157 - -
Rops10g00455 159 SMART ringv_2 112 156 IPR011016 GO:0008270
Rops10g00455 159 Pfam Ring finger domain 112 156 IPR001841 -
Rops10g00455 159 SMART ring_2 113 155 IPR001841 -
Rops10g00455 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00455 Rops-Chr10 12273095 12273574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00455 89 156 C3H Transcription Factor Family AT3G60080 44.118 1.06e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00455 - - cam:101490108 99.3673