Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00453 ATGGATGGGGGCTGGTTGTTATGGAAGTGTTCTACTCATTCGGACTGCACCAAGCAGGAGATGAAGCCATCTCAAACTTCACGAGCAGGTTTGGTTTCTATTATTCCACAAAGGCACAGCTTGTCTATGTTGTATGGAGTGGAGGGCCTCGTGGTGTCTTCAATGCATGCAGCTGCACAGACCAAGCCTGAACCTTTAGTGCACCGTAATTTGAAACCAGGCAACATCTTGCTAGATCAGAATTATGTAAATAAGATAAGTGGTGTCGGGTTGACAAGACTTGCCCCTGTGGTAGCTGAAAATGTGACGCAGTGCTGCATGGCATCAGTAGCTGGAACTTTCTGCTATATTGATCCAGAGTGTCAGCAAACAGGAGTGCTCGGTGTCAAGTCCGATGTTTATTCCTTGGGGATCATGTTTCTACAATTATTGGCAGGCAGGGCTCTGATGGGATTGGCTCACCATGTTGAAGAGTGTTTAGGGAAGGGCACGTTGGTGGCAATGCTGGACCCATCTCTCACGGACTGTCCTCTTGAAGGCAGCCATCTTCCTAGTAGCTTCCCGTTGCCCTCTCTCTCTCGTGGGCTCTCAAAGCATGGGTGCAAAAAGCATGCAACGTGCATGAATATGGAGATGGTGCTGCCTACACTTCTCGAACTCTATCAACGCACCGCAGCTGCTCATCTCAGACGTCAGCCTTCCACCATCCTGCCCTGGACCAAAGACGCTCATTTGGGAATTACTCAAATGCTGCATTACAGCGATTTTCTTCTTGACTTTCTCGTGGGTGTTGTTTCGGCTGCTGTCTCCAAAACTGCTGCTGCCCCCATTGAACGGGTTAAGCTTTTGATCCAGAACCAGGATAAGATGATCAAATCTGGCCGGCTTTCTGAGCCCTACAAGGGTGTGGGTGATCGTCTTAAGAGAACAATGAAGGATGAGGGTGTTGTTGCCCTATGGAGAGGTAGCACTGCAAATGTCATCCGTTATTTCCCCACTCAGGACAGACCAACTCCCAAAATGATTGAAGTCCTCGGTGATGTTGGTTACATTGTTCAGATTGGGTTTGGACCAAGCTATATCTTATCTGTAACGGAAGATGGTGCAGTATACTCCTTTGGATCAGGTGCTAATTTCTGTCTTGGCCATGGTGAGCAACACAATGAGTTTCAACCACGTGCTATACAGAAATTTAAAAGAAAAGGTATCCATGTTGTCCGTGTATCTGCTGGGGATGAGCATGCAGTGGCACTTGATTCGAATGGATTTGTATATACATGGGGCAAGGGATACTGTGGTGCTTTAGGTCACGGAGATGAGATTGAGAAGACAACACCAGAGATCTTGACTAGTCTTAAGAGTCACTTGGCTGTTCAGGTCTGTGCAAGAAAGAGGAAAACCTTTGTTCTAGTTGACTCCGGTTCGGTCTATGGCTTTGGCTCCATGGGATTTGGTAGCCTCGGATTTTTGGATAGAATCTTGAAACCTCGAATGTTAGATACATTGAGAGCACACCATGTTTCTCAAATTAGCACTGGCTTGTACCACACTGTGGCACCACACACATACGGGTTTATGGGTGGTGTTATTTACGTTGTACTAAAGAGCAACTTTGTCCCAAAGGACAATTGCAAAGCTTTCCAAAACCTAGAGGTAAATCTAGGGTCTCTATCAGATACTATGCTCTTAGGAACACCATGTAATTTCACTATCTCATCCACATATAGCTTGGCTAACCTCTCTAAAGAATAG 1752 0.4629 MDGGWLLWKCSTHSDCTKQEMKPSQTSRAGLVSIIPQRHSLSMLYGVEGLVVSSMHAAAQTKPEPLVHRNLKPGNILLDQNYVNKISGVGLTRLAPVVAENVTQCCMASVAGTFCYIDPECQQTGVLGVKSDVYSLGIMFLQLLAGRALMGLAHHVEECLGKGTLVAMLDPSLTDCPLEGSHLPSSFPLPSLSRGLSKHGCKKHATCMNMEMVLPTLLELYQRTAAAHLRRQPSTILPWTKDAHLGITQMLHYSDFLLDFLVGVVSAAVSKTAAAPIERVKLLIQNQDKMIKSGRLSEPYKGVGDRLKRTMKDEGVVALWRGSTANVIRYFPTQDRPTPKMIEVLGDVGYIVQIGFGPSYILSVTEDGAVYSFGSGANFCLGHGEQHNEFQPRAIQKFKRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEILTSLKSHLAVQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRILKPRMLDTLRAHHVSQISTGLYHTVAPHTYGFMGGVIYVVLKSNFVPKDNCKAFQNLEVNLGSLSDTMLLGTPCNFTISSTYSLANLSKE* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00453 583 PRINTS Adenine nucleotide translocator signature 256 268 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Rops10g00453 583 PRINTS Adenine nucleotide translocator signature 300 321 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Rops10g00453 583 Gene3D Transferase(Phosphotransferase) domain 1 37 226 - -
Rops10g00453 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Rops10g00453 583 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00453 583 ProSiteProfiles Solute carrier (Solcar) repeat profile. 254 347 IPR018108 -
Rops10g00453 583 SUPERFAMILY RCC1/BLIP-II 333 520 IPR009091 -
Rops10g00453 583 PRINTS Mitochondrial carrier protein signature 259 272 IPR002067 GO:0055085
Rops10g00453 583 PRINTS Mitochondrial carrier protein signature 272 286 IPR002067 GO:0055085
Rops10g00453 583 PRINTS Mitochondrial carrier protein signature 322 342 IPR002067 GO:0055085
Rops10g00453 583 Pfam Protein kinase domain 66 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g00453 583 SUPERFAMILY Protein kinase-like (PK-like) 64 151 IPR011009 -
Rops10g00453 583 Gene3D Mitochondrial carrier domain 251 332 IPR023395 -
Rops10g00453 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 421 IPR000408 -
Rops10g00453 583 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 474 523 IPR000408 -
Rops10g00453 583 PANTHER OS02G0152300 PROTEIN 59 179 - -
Rops10g00453 583 Pfam Regulator of chromosome condensation (RCC1) repeat 367 418 IPR000408 -
Rops10g00453 583 Pfam Regulator of chromosome condensation (RCC1) repeat 421 462 IPR000408 -
Rops10g00453 583 SUPERFAMILY Mitochondrial carrier 254 334 IPR023395 -
Rops10g00453 583 Gene3D - 333 532 IPR009091 -
Rops10g00453 583 Pfam Mitochondrial carrier protein 256 334 IPR018108 -
Rops10g00453 583 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 408 418 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00453 Rops-Chr10 12210330 12216483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00453 60 179 Receptor kinase-like Gene Family AT1G78940 69.167 3.44e-49 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops10g00453 Pkinase 4.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00453 - - lang:109357264 333.954