Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00451 ATGGAGCAAGAAGGATGGCGTCAAACGCTAACTCAAGATGAAAGAAGAATTCTAAGAAGGTTGTCCGAGCGAAGAAATGTTCATACCAATGTTAATGAATTTCATCCTGAAATTTATGCTTATAATGTTGACTGGTATAATAGGTTAAGACAGAACCACCTGAACATGAATGTTCAAGACCGCTTGATAAGTTACATGATGAGTCGTGACTTGGCCTCCCACATTGATGAGGATGAGAATTTAACGACAGATAATTCTGAAACTCAAAACTCTTTTGAAAATCTTGAGAGGTTTAGAATTGAAGAAGGAGCGTTGGAGGCTAAGTCCGAGTGTTCCATATGTCTTGGGGAGCTTTCAACTGGGTCACAAGCTATTCGGTTGCCCAATCCGTGCTCTCATATTTATCATCAAGATTGCATTATTAGATGGCTTAACATGTCAAACACATGCCCTTTGTGTCGTAGACCTGTTTGA 474 0.3966 MEQEGWRQTLTQDERRILRRLSERRNVHTNVNEFHPEIYAYNVDWYNRLRQNHLNMNVQDRLISYMMSRDLASHIDEDENLTTDNSETQNSFENLERFRIEEGALEAKSECSICLGELSTGSQAIRLPNPCSHIYHQDCIIRWLNMSNTCPLCRRPV* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00451 157 ProSiteProfiles Zinc finger RING-type profile. 111 154 IPR001841 -
Rops10g00451 157 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 46 155 - -
Rops10g00451 157 SMART ring_2 111 153 IPR001841 -
Rops10g00451 157 Pfam Ring finger domain 110 154 IPR001841 -
Rops10g00451 157 SMART ringv_2 110 154 IPR011016 GO:0008270
Rops10g00451 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Rops10g00451 157 CDD RING-H2_PA-TM-RING 110 154 - -
Rops10g00451 157 SUPERFAMILY RING/U-box 110 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00451 Rops-Chr10 12201233 12201706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00451 6 154 C3H Transcription Factor Family AT3G02340 26.144 2.83e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00451 - - cam:101499142 99.7525