Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00449 ATGGAGCATGAAGGAGGGTCTCAAATGCTAAGTAAAGATGAAAGACAAATTCTAAGAAGGTTGTCCATGCGATGGAATGTTCATACTGATGTTTATGAACTTCTTCCAGATGTTTACGCTAGTATTGTTAACCAATATCATAGGTTTAGGCAGAACCACCAGGACTTGAATGTTGATGTCTTTCGTGATCGTGTTATAAGTCATAGGATTAGTTGTGGTTGGACCTCCAACATTTATGCTTTTCATGAGCATTATGTTATTAGGGATGAGAATTTTGTGGCAGGGAACCCTGAAACTCTAGACTCTTTTGAAAGGTTTAGAATTGAAGAAGGAACGATGGAATTAGAGTCTGATTGTTCCATATGTCTTGGGAAGCTTTCAATTGGGTCATTAGCAATTCGCTTGCCAAATCCATGCTCTCATGTCTATCATCAACTTTGCATCATTAGGTGGCTCTACGCATCTAATAAATGCCCTTTGTGTCGTAGGACTATCTAA 498 0.3876 MEHEGGSQMLSKDERQILRRLSMRWNVHTDVYELLPDVYASIVNQYHRFRQNHQDLNVDVFRDRVISHRISCGWTSNIYAFHEHYVIRDENFVAGNPETLDSFERFRIEEGTMELESDCSICLGKLSIGSLAIRLPNPCSHVYHQLCIIRWLYASNKCPLCRRTI* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00449 165 Pfam Ring finger domain 118 162 IPR001841 -
Rops10g00449 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 165 IPR013083 -
Rops10g00449 165 PANTHER SI:CH211-59O9.10 69 165 - -
Rops10g00449 165 SUPERFAMILY RING/U-box 100 165 - -
Rops10g00449 165 ProSiteProfiles Zinc finger RING-type profile. 119 162 IPR001841 -
Rops10g00449 165 SMART ring_2 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00449 Rops-Chr10 12142555 12143052 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00449 55 163 C3H Transcription Factor Family AT5G66070 29.661 5.98e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00449 - - cam:101499142 105.145